BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322576
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05642.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 776 0.0
AT3G60920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beige/BEA... 279 4e-74
> AT2G05642.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:2098087-2101167 REVERSE LENGTH=1889
Length=1889
Score = 776 bits (420), Expect = 0.0
Identities = 525/574 (91%), Gaps = 13/574 (2%)
Strand=Plus/Plus
Query 784 ATTCGTGGAGGGGCATGTAACATTATTGCATCAATATTCTCCATCGACACAAAAGTTCCA 843
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 915 ATTCG-GGAGGGGCATGTAATATTATTGCATCAATATTCTCCATTGACACAAAAGTTCCA 973
Query 844 TGGTTTTATATTGGTTGTACTAAATGTTTCAAGAAAGTATCTCCTTACTTCAACCCTGAA 903
||||||||||||||||||| || ||||||||| |||||||||||||| ||||||||||||
Sbjct 974 TGGTTTTATATTGGTTGTAATATATGTTTCAAAAAAGTATCTCCTTATTTCAACCCTGAA 1033
Query 904 ACTGAAGAAATAGAAGCAGGAAAATATGAATGTGAAAAATGTGACACATTTGTAACTACT 963
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1034 ACTGAAGAAATAGAAGCTGGAAAATATGAATGTGAAAAATGTGACACATTTGTTACTACT 1093
Query 964 ACAAGCACCAGGTACAAGGTGCAAGCAACAGTTATTGACCATACT-GGTAGCGCATCATT 1022
||||||||||||| || |||||||| |||||| ||||||||||| || | ||||||||
Sbjct 1094 ACAAGCACCAGGTTCAGGGTGCAAGTTACAGTTCTTGACCATACTGGGGA-AGCATCATT 1152
Query 1023 TCTTCTTTTCGATCAGGATGTCATCAAGCTCATTCACAAATCCGCATATGAGTTGCTCGA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1153 TCTTCTTTTCGATCAGGATGTCATCAAGCTCATTCACAAATCCGCATATGAATTGCTCGA 1212
Query 1083 GCAACAAGTTCAGTTTAATCGTTCAGACCAAATTCCGCAAGAGCTGCTTGATTTACAAGG 1142
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||
Sbjct 1213 GCAACAAGTTCAGTTTAATCGTTCCGACAAAATTCCTCAAGAGCTGCTTGATTTAGAAGG 1272
Query 1143 GCTTCAATTTGTTTTCAAGATACAAGGTTCAGACTCGACCAAATTCAACTC-AC-AGTCT 1200
|| |||||||||||||| |||||||||||||||||| |||||||||| | | || | |||
Sbjct 1273 GCGTCAATTTGTTTTCACGATACAAGGTTCAGACTCAACCAAATTCAGC-CGACCA-TCT 1330
Query 1201 A-CGTTCAGAGTATT-TGAACTTACTGACAATCCCGAAATTGTTCAAAAGTTTCAGGATA 1258
| | || || || || ||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1331 ATCTTT-AGGGT-TTATGAACTTACGGACAAACCCGAAATTGTTCAAAAGTTTCAGGAAA 1388
Query 1259 ATATT-TTGCAAGTGAACAAAACTGATCCAAACACTCACATGGTCTCAAGCTTTTCAAAC 1317
|| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 AT-TTATTGCAAATGAACACAACTGATCCAAACACTCACATGGTCTCAAGCTTTTCAAAC 1447
Query 1318 CCAACTATGAGCGAGATTGAACCTGATTCGGACA 1351
|||||| ||||||| |||||||||||| ||||
Sbjct 1448 TCAACTACCAGCGAGACTGAACCTGATTCAGACA 1481
Score = 704 bits (381), Expect = 0.0
Identities = 478/525 (91%), Gaps = 6/525 (1%)
Strand=Plus/Plus
Query 1 ATGCCGCTAGAAGTAACACCAGTTTCACAGCT-TAGTTTTGACCTCTCAACATGCAAAGT 59
|||||||| ||| ||||||| ||||||||||| | || | |||| ||||| ||||||||
Sbjct 125 ATGCCGCTGGAAATAACACCGGTTTCACAGCTGCA-TTCTCACCTGTCAACGTGCAAAGT 183
Query 60 TAAAGTCCGGATTGCTCGCG-TCTGGGCATACCATAAAAAAGATAGACTCAAAGATATTA 118
||||| || |||||||| | | ||||||||||| |||||||| |||| |||||||||||
Sbjct 184 GAAAGTTCGAATTGCTCG-GTTATGGGCATACCACAAAAAAGACAGACCCAAAGATATTA 242
Query 119 CGGGAATAGACCTTCTCCTGGTGGATGACAAGGGAGACAGGATACAAGCCTCCATCAGAT 178
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 243 TGGGAATAGACCTTCTATTGGTGGATGACAAGGGAGAGAGGATACAAGCCTCCATCAGAT 302
Query 179 CGCAATTACTTACAAAATTCCAAGGA-AAACTAGAAGAGGGAGATTGCTACATGATTATG 237
||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 303 CGCAATTACTTTCAAAATTTC-AGGAGAAACTAGAAGAGGGAGATTGCTACATGATTATG 361
Query 238 AACTTTGAGATTTTATATAATGGAGGTAGTTATAGAGCCAGTTCTCACCCCTACAAGATC 297
||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 362 AACTTTGAGATTTCAGATAATGGAGGGAGTTATAGAGCCAGTTCTCACCCCTACAAGATC 421
Query 298 AACTTCATGTCCATGACACACATAATTGGAATCCATGAACTTAAAGAGGTTAATGTTTCG 357
||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 422 AACTTCATGTCCATGACACACATCATTGGAATGCAAGAACTTAAAGAGGTTAATGTTTCA 481
Query 358 GGGAGGCAGACCAAGTTATTGAATTTACAGCTGAGAGATCTTGGGGAATCAGTCATCGAT 417
||| | || || |||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 482 GGGCGACAAACAAAGTTATTAAATTTACAGCTTAGAGATCTTGGAGAATCAGTCATCGAT 541
Query 418 GTTATTTTGTGGGGAAAATGGGCAGAAGATTTGTACTCTTATGTTAAGGGCTATAAAGAT 477
|||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 542 GTTACTTTGTGGGAAAAATGGGCAGAAGATCTGTACTCTTATGTTAAGGGCTACAAAGAT 601
Query 478 GGTTCAATTGTTTTAGTTGGAAGCTTGATGAAGACAAAGCCATAT 522
|||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 602 GGTTCAATTGTTTTAGTTGGAAGCTTGATGAAGATAAAGACATAT 646
Score = 291 bits (157), Expect = 2e-77
Identities = 196/214 (92%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 1349 ACACAATCACTATTGACAGT-ACATCTTCCGAGGCGGCTAATTATGAAAACAGCAACACG 1407
||| ||||| ||||||| | | |||||||||||||||||| ||||||||||||||| ||
Sbjct 1514 ACA-AATCA-GATTGACACTGA-ATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCG 1570
Query 1408 TCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAATTTGACTACGACGTCAAAACGA 1467
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 1571 TCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAAATTGACTCCAACGTCAAAACGA 1630
Query 1468 TCACTAACTTCATCGGAAGATAATGCAGCTCAACAGTCATCTACAAAGCCTAAATTGTTG 1527
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1631 GCACTAACTTCATCGAAAGATAATGCAGCTCAAAAGTCATCTACAAAGCCTAAATTGTTG 1690
Query 1528 TCCAAGGCCGAGATTAAGAAAGAAAAGAAA-TGA 1560
|||||||| ||||| ||||||||||| ||| |||
Sbjct 1691 TCCAAGGCTGAGATAAAGAAAGAAAA-AAAGTGA 1723
Score = 265 bits (143), Expect = 1e-69
Identities = 185/205 (90%), Gaps = 3/205 (1%)
Strand=Plus/Plus
Query 553 ATCTCTGTACAAAATGCTTCATTTTCGACCAAGCTGTTTATCAATTCCCCAATTGCCGAG 612
|||||||| |||||| | ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 717 ATCTCTGTCCAAAAT-CATCATTTTCGACCAAGCTCTTTATCAATTCCTCAATTGCCGAG 775
Query 613 ATAACAGAGTTTAAAGAAAGTTTGGCCAAATCTGATCATTTAGCTTTAACTACGATTTCA 672
||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 776 ATAACTGAGTTTAAAGAAAGTTTGGCCAAATCTGATTGTTTAGCTTTAACAACGATTTCA 835
Query 673 ACAATTACGTCTTCAAGCTCAAGCAAGAATTCTAAAGCTTCATTCTCCTTGGCAA-ATCA 731
||||||||||||||||| ||||||||| |||| ||| |||||||||| ||| | | ||||
Sbjct 836 ACAATTACGTCTTCAAGTTCAAGCAAGCATTCAAAACCTTCATTCTCTTTG-CGAGATCA 894
Query 732 AAAAACAATTGCAGATATTCATTCG 756
|||||| ||||||||||| |||||
Sbjct 895 AAAAACGATTGCAGATATAAATTCG 919
> AT3G60920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beige/BEACH
(InterPro:IPR000409); BEST Arabidopsis thaliana protein
match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1);
Has 1795 Blast hits to 1563 proteins in 214 species:
Archae - 2; Bacteria - 29; Metazoa - 830; Fungi - 160;
Plants - 230; Viruses - 0; Other Eukaryotes - 544 (source:
NCBI BLink). | chr3:22503328-22513031 REVERSE LENGTH=5826
Length=5826
Score = 279 bits (151), Expect = 4e-74
Identities = 186/202 (92%), Gaps = 5/202 (2%)
Strand=Plus/Plus
Query 1349 ACACAATCACTATTGACAGT-ACATCTTCCGAGGCGGCTAATTATGAAAACAGCAACACG 1407
||| ||||| ||||||| | | |||||||||||||||||| ||||||||||||||| ||
Sbjct 5596 ACA-AATCA-GATTGACACTGA-ATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCG 5652
Query 1408 TCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAATTTGACTACGACGTCAAAACGA 1467
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 5653 TCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAAATTGACCCCGACGTCAAAACGA 5712
Query 1468 TCACTAACTTCATCGGAAGATAATGCAGCTCAACAGTCATCTACAAAGCCTAAATTGTTG 1527
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 5713 TCACTAACTTCATCGAAAGATAATGCAGCTCAAAAGTCATCTACAAAGCCTAAATTGTTG 5772
Query 1528 TCCAAGGCCGAGATTAAGAAAG 1549
|||||||| ||||| || ||||
Sbjct 5773 TCCAAGGCTGAGAT-AATAAAG 5793
Score = 122 bits (66), Expect = 7e-27
Identities = 76/81 (94%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1271 TGAACAAAACTGATCCAAACACTCACATGGTCTCAAGCTTTTCAAACCCAACTATGAGCG 1330
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 5483 TGAACACAACTGATCCAAACACTCACATGGTCTCAAGCTTTTCAAACCCAACTACCAGCG 5542
Query 1331 AGATTGAACCTGATTCGGACA 1351
||| |||||||||||| ||||
Sbjct 5543 AGACTGAACCTGATTCAGACA 5563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5