BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322596
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family ... 582 9e-166
> AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family
83, subfamily A, polypeptide 1 | chr4:7990485-7992311 REVERSE
LENGTH=1735
Length=1735
Score = 582 bits (315), Expect = 9e-166
Identities = 447/508 (88%), Gaps = 19/508 (4%)
Strand=Plus/Plus
Query 1 ATGAAAGAACAAGGGTT-AACATTCGTTACTGAAGAAGACGTCAAGAACCTTCCTTACTT 59
||||||| | || |||| ||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1029 ATGAAAG-AGAAAGGTTCAACGTTCGTTACTGAAGACGATGTCAAGAACCTTCCTTACTT 1087
Query 60 CAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAGCCGGTCATACCTCTCCTTATCCCTCG 119
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 1088 CAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAACCAGTGATTCCTCTCCTTATCCCTCG 1147
Query 120 TGCGTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCGGCCGGGACAACGGTCAA 179
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1148 TGCTTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCCGCAGGAACAACGGTCAA 1207
Query 180 CGTCAACGCCTGGGCCGTGTCACGTGACGAGAAGGAGTGGGGACCGAACCCTGACGAGTT 239
||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1208 CGTCAACGCGTGGGCCGTGTCACGTGACGAGAAAGAATGGGGACCGAACCCTGATGAGTT 1267
Query 240 CAGGCCCGAGAGGTTTCTTGAGAAGGAGGTTGACTTCAAAGGCACAGACTATGAGTTTAT 299
|||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1268 TAGGCCCGAGAGGTTTCTTGAGAAGGAAGTTGACTTCAAAGGCACGGACTACGAGTTTAT 1327
Query 300 ACCATTCGGGTCAGGCCGGAGAATGTACGTTCCATATGCGAACCTTCTTG--GTGA-GAC 356
||| |||||||||||||||||||||| | | ||||| | || | | || | |
Sbjct 1328 ACCGTTCGGGTCAGGCCGGAGAATGTGCCCGGGA-ATGCGT-C-TTGGGGCCGCGATG-C 1383
Query 357 --G-GGTG--TTA--C-A-C-TTCTTCTCAACTTCAACTTCAAACTTCCTAATGGGATGA 406
| ||| ||| | | | |||| |||| ||||||||| |||||||||||||||||||
Sbjct 1384 TTGAGGTTCCTTATGCGAACCTTCTCCTCAGCTTCAACTTTAAACTTCCTAATGGGATGA 1443
Query 407 AAGCAGATGAGATCAATATGGATGTCATGACGGGTCTTGCTATGCATAAGTCGCAGCATC 466
|| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1444 AACCAGATGATATCAATATGGATGTCATGACTGGTCTTGCTATGCACAAGTCGCAGCATC 1503
Query 467 TCAAGCTTGTTCCCGAGAAAGTGAACAA 494
||||||||||||| ||||||||||||||
Sbjct 1504 TCAAGCTTGTTCCAGAGAAAGTGAACAA 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5