BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322631
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03290.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1016 0.0
AT2G03040.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 771 0.0
> AT2G03290.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr2:999422-1000606 FORWARD LENGTH=814
Length=814
Score = 1016 bits (550), Expect = 0.0
Identities = 612/642 (95%), Gaps = 3/642 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTTCGTCGAAGCTCGATTTTGCTTTTGATCATTGCGTTGTTATCTCCCAGGACA 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATCTTTGTCGAAGCTCGATTTTGCTTTTGATCATTGCGTTGTTATCTCCTAGGACA 60
Query 61 CTATCAATGCGTTACGAGCTAAAGTCTTCGACAACGAAGTGCATCGGAGAGGATATTCAC 120
||||||||||||||||| ||||||||||||| |||||| || ||||||||||| ||||||
Sbjct 61 CTATCAATGCGTTACGAACTAAAGTCTTCGAAAACGAAATGTATCGGAGAGGAGATTCAC 120
Query 121 GAAAACTCCATGTCCGTTGGTAAATACTTCATCGTAAACCCTAACGAAG---ATCATCCT 177
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GAAAACGCCATGTCCATTGGTAAATACTTCATCGTAAACCCTAACGAAGATAATCATCCT 180
Query 178 CTTCCTGCTTCTCATAAGATCATCGTCAAGGTGATGCCGCCACAAGGGAAGAATTTGCAC 237
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CTTCCTGATTCTCACAAGATCATCGTCAAGGTGATGCCACCACAAGGGAAGAATTTGCAC 240
Query 238 GAAGCTGATAATGTAGAGGCTGGTCAGTTCTCGTTTACTGCTTATGAAAATGGGAGTTAT 297
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGCCGATAAGGTAGAGGCTGGTCAGTTCTCGTTTACTGCTTATGAAAATGGGAGTTAC 300
Query 298 GTAGCGTGCATCACAGCCGTTGATTATAAGCCGGAGACTACGTTGACCATTGATTTTGAT 357
|||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 301 GTAGCGTGCATCACTGCCATTGATTATAAGCCGGAGACCACGTTGACTATTGATTTTGAT 360
Query 358 TGGAAGACTGGTGTTCACTCTAAGGAATGGACCAATGTGGCTAAGAAGAGTCAAGTTGTT 417
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 361 TGGAAGACTGGTGTTCACTCTAAGGAGTGGACCAATGTGGCTAAGAAGAGTCAAGTTGAT 420
Query 418 ATGATGGAGTATCAAGTTAAGACCTTGATGGACACTGTTAATTCCATCCATGAGGAGATG 477
|||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 421 ATGATGGAGTATCAGGTTAAGACCTTGATGGATACTGTTATTTCCATACATGAGGAGATG 480
Query 478 TATTATCTTCGTGAAAGAGAAGAGGAAATGCAAGAACTGAATAGATCCACAAACTCGAAG 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATTATCTTCGTGAAAGGGAAGAGGAAATGCAAGAACTGAATAGATCCACAAACTCGAAG 540
Query 538 ATGGCGTGGCTGAGTTTCGGGTCGCTTGTGGTTTGTTTATCGGTGGCTGGTCTACAATTC 597
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGGCGTGGTTGAGTTTCGGGTCGCTTGTGGTTTGTTTATCGGTGGCTGGTCTACAATTC 600
Query 598 TGGCACTTGAAAACTTTCTTTGAGAAAAAGAAACTCATCTAA 639
||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGCACTTGAAAACTTTCTTTGAGAAAAAGAAACTCATCTAA 642
> AT2G03040.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr2:892823-893572 REVERSE LENGTH=501
Length=501
Score = 771 bits (417), Expect = 0.0
Identities = 471/497 (95%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 1 ATGGATCTTCGTCGAAGCTCGATTTTGCTTTTGATCATTGCGTTGTTATCTCCCAGGACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCTTCGTCGAAGCTCGATTTTGCTTTTGATCATTGCGTTGTTATCTCCCAGGACA 60
Query 61 CTATCAATGCGTTACGAGCTAAAGTCTTCGACAACGAAGTGCATCGGAGAGGATATTCAC 120
|||||||||||||||||| |||||||||||| |||||| |||||||| ||||| ||||||
Sbjct 61 CTATCAATGCGTTACGAGTTAAAGTCTTCGAAAACGAAATGCATCGGTGAGGAGATTCAC 120
Query 121 GAAAACTCCATGTCCGTTGGTAAATACTTCATCGTAAACCCTAACGAAGATCATC--C-T 177
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 121 GAAAACGCCATGTCTATTGGTAAATACTTCATCGTAAACCCTAACGAAGATCATCATCCT 180
Query 178 CTTCCTGCTTCTCATAAGATCATCGTCAAGGTGATGCCGCCACAAGGGAAGAATTTGCAC 237
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CTTCCTGATTCTCACAAGATCATCGTCAAGGTGATGCCACCACAAGGGAAGAATTTGCAC 240
Query 238 GAAGCTGATAATGTAGAGGCTGGTCAGTTCTCGTTTACTGCTTATGAAAATGGGAGTTAT 297
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGCCGATAATGTAGAGGCTGGTCAGTTCTCGTTTACTGCTTATGAAAATGGGAGTTAC 300
Query 298 GTAGCGTGCATCACAGCCGTTGATTATAAGCCGGAGACTACGTTGACCATTGATTTTGAT 357
|||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 301 GTAGCGTGCATCACTGCCATTGATTATAAGCCGGAGACCACGTTGACTATTGATTTTGAT 360
Query 358 TGGAAGACTGGTGTTCACTCTAAGGAATGGACCAATGTGGCTAAGAAGAGTCAAGTTGTT 417
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 361 TGGAAGACTGGTGTTCACTCTAAGGAGTGGACCAATGTGGCTAAGAAGAGTCAAGTTGAT 420
Query 418 ATGATGGAGTATCAAGTTAAGACCTTGATGGACACTGTTAATTCCATCCATGAGGAGATG 477
|||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 421 ATGATGGAGTATCAGGTTAAGACCTTGATGGATACTGTTATTTCCATACATGAGGAGATG 480
Query 478 TATTATCTTCGTGAAAG 494
|||||||||||||||||
Sbjct 481 TATTATCTTCGTGAAAG 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5