BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322643
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03390.1 | Symbols: | uvrB/uvrC motif-containing protein | ... 1114 0.0
> AT2G03390.1 | Symbols: | uvrB/uvrC motif-containing protein
| chr2:1030402-1032625 REVERSE LENGTH=1366
Length=1366
Score = 1114 bits (603), Expect = 0.0
Identities = 644/664 (97%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 1 ATGAATCTGGAGCAGTACGACATTGCGCAGCAACTAAGAGAAAAGCTAACTGAGGTGGAA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 471 ATGAATCTGGAGCAGTACGACATTGCGCAACAACTAAGAGAAAAGCTAACTGAGGTGGAA 530
Query 61 GAGGAGTCGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAGGAGTCGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAA 590
Query 121 GACAAGGGTATTAGTATTATAAGGCTACGTGCCGATCTCCAGAATGCCATTGACAGTGAG 180
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 591 GACAAGGGTATTAGCATTATAAGGCTACGTGCAGATCTCCAGAATGCCATTGACAGTGAG 650
Query 181 GATTACGGTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GATTACGGTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTA 710
Query 241 GCTGTATCTGCGAAAGCCTTGGCTTTTGA-AAATGCAGAGTATGCATTTCGCTTAGGACA 299
||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||
Sbjct 711 GCTGTATCTGCGAAAGCCTTGGCTTTTGAGAAA-GCAGAGTATGCATTTCGTTTGGGACA 769
Query 300 GAAGCTTAGACACAAAACTTTTGGTTACCGGGCTGTAGTTTGTGGTATGGATCCAATTTG 359
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 770 GAAACTTAGACACAAAACTTTTGGTTACCGGGCTGTAGTGTGTGGTATGGATCCAATTTG 829
Query 360 CTGTGAATCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGCGGATCCAA 419
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 830 CAGTGAATCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGTGGATCCAA 889
Query 420 TCAGCCATTTTATCAGGTTCTAGTCGATGCTCGGACGCACCCAGATCTAGTAGTGGCATA 479
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 890 TCAGCCATTTTATCAGGTTCTAGTCGATGTTCGGACGCACCCAGATCTACTAGTGGCATA 949
Query 480 TGTTGCTGAAGACAATCTATTAGCTCCCGAGAAACCCGACAAAGAAAGGTTTGATCATCC 539
|||||||||||||||||| |||||||| || |||||||| || |||||||||||||||||
Sbjct 950 TGTTGCTGAAGACAATCTGTTAGCTCCTGAAAAACCCGATAAGGAAAGGTTTGATCATCC 1009
Query 540 ATACATTTCTTTTCTCTACTATGGAGCCGACACAGCTGGAGATTTCATCCCTGTCAAACA 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1010 ATACATTTCTTTTCTCTACTATGGAGCTGACACAGCTGGAGATTTCATCCCTGTCAAACA 1069
Query 600 ATTGCGTGAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGAAGAAGA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1070 ATTGCGTGAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGACGAAGA 1129
Query 660 TTAA 663
||||
Sbjct 1130 TTAA 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5