BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322644
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01520.1 | Symbols: MLP328 | MLP-like protein 328 | chr2:235... 763 0.0
AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 608 1e-173
AT3G26460.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 322 2e-87
AT3G26450.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 289 2e-77
> AT2G01520.1 | Symbols: MLP328 | MLP-like protein 328 | chr2:235925-237147
FORWARD LENGTH=789
Length=789
Score = 763 bits (413), Expect = 0.0
Identities = 441/455 (97%), Gaps = 0/455 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 68 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAGAAACAC 127
Query 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAA 187
Query 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGGAGCCATCAAGATTTGGAACTAC 180
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 188 GGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCCATCAAGATTTGGAACTAC 247
Query 181 ACATGCGATGGGAAAGCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATG 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATG 307
Query 241 GCGGTAACGTTCAGAGGACTGGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 308 GCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTC 367
Query 301 ATCTTTCAGTTCATTCAAAAGTCCCCTGATGATATCATCTGTAAGATCACTATGATTTGG 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 368 ATCTTTCAGTTCATTCAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATCTGG 427
Query 361 GAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGCCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGCCTC 487
Query 421 GCCGCTGACATGGACGATCACGTTCTCAAAGCCTA 455
|| ||||||||||| ||||||||||||||||||||
Sbjct 488 GCTGCTGACATGGATGATCACGTTCTCAAAGCCTA 522
> AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:8107337-8108307 FORWARD
LENGTH=673
Length=673
Score = 608 bits (329), Expect = 1e-173
Identities = 416/458 (91%), Gaps = 6/458 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 69 ATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACAC 128
Query 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120
|||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 129 TACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCAA 188
Query 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGGAGCCATCAAGATTTGGAACTAC 180
||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 189 GGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATTTGGAACTAC 248
Query 181 ACATGCGATGGGAAAGCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATG 240
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 249 ACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGAGAGAGATAGACGATGAAAACATG 308
Query 241 GCGGTAACGTTCAGA-GGACTGGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGT 299
|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 309 GCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGATAC 367
Query 300 CATCTTT-CAGTTCATTCAAAAGTCCCCTGATGATATCATCTGTAAGATCACTATGATTT 358
||| ||| |||||||||||||||||||| ||||||||| | || ||||||||||||| |
Sbjct 368 CAT-TTTACAGTTCATTCAAAAGTCCCCGGATGATATCGTTTGCAAGATCACTATGACCT 426
Query 359 GGGAGAAGCAAAACGATGACAT-GCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGC 417
||||||||| | ||||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct 427 GGGAGAAGCGAGCCGATGAC-TCGCCTGAACCCAGCAACTACATGAAGTTGGTCAAGAGT 485
Query 418 CTCGCCGCTGACATGGACGATCACGTTCTCAAAGCCTA 455
||||| ||||||||||||| |||||||||||||||||
Sbjct 486 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTA 523
> AT3G26460.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:9683873-9684657 REVERSE
LENGTH=689
Length=689
Score = 322 bits (174), Expect = 2e-87
Identities = 370/463 (80%), Gaps = 19/463 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60
||||||||||| |||||||| ||||||||||| || || |||||| | || |||||||||
Sbjct 51 ATGGCGACGTCGGGAACATACGTGACGGAGGTACCGTTAAAAGGAACAGCAGAGAAACAC 110
Query 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120
| | || | ||||||| |||||||| |||||||| ||||| | ||||||||||||||
Sbjct 111 TTCCAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCTGTTGGCCACCACATCCAA 170
Query 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGG-AGCCATCAAGATTTGGAACTA 179
|||||| | | |||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct 171 GGTGTTTCTGTTCACGACGGCGAATGGGACACTCACGGAAG-CATCAAGATTTGGAACTA 229
Query 180 CACA-T--GCGATGGGAAAGC-GGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGA 235
|||| | | ||| ||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 230 CACATTGGGAGAT-GGAAAGCAAGAGGAATTCAAGGAGAGGAGAGAGATGGACGATGAGA 288
Query 236 ATATGGCGGT-AACGTTCAG-AGGACTGGAAGGTCACGTGATGGAGCAGCTTAAAGTGTA 293
||| | | || ||| | |||||||||||||||||||||||||||||| || |||||
Sbjct 289 ATAACACAATGAAGGTT--GTAGGACTGGAAGGTCACGTGATGGAGCAGCTCAAGGTGTA 346
Query 294 TGACG-TC-ATCTTTCAGTTCATTCAAAAGTCCCCTGATGATAT-CATCTGTAAGATCAC 350
||| | || || || || || |||| ||||| || ||| | |||||| || |||||
Sbjct 347 TGA-GATCGAT-TTCCAATTTATTCCCAAGTCTGAAGAAGAT-TGCATCTGCAAAATCAC 403
Query 351 TATGATTTGGGAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATG-AAGTTCG 409
|||||| |||||||||| |||||||| | || || || |||| ||||||| || | |
Sbjct 404 TATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAACTCC- 462
Query 410 TCAAGAGCCTCGCCGCTGACATGGACGATCACGTTCTCAAAGC 452
|||||||| | | ||| ||||| || ||||| || |||||
Sbjct 463 TCAAGAGCATGGTTATTGATATGGAGGACCACGTCCTTAAAGC 505
> AT3G26450.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:9681298-9683434 REVERSE
LENGTH=889
Length=889
Score = 289 bits (156), Expect = 2e-77
Identities = 339/426 (80%), Gaps = 17/426 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60
||||||||||| |||||||| |||||| |||| || || |||||| | | ||||||||||
Sbjct 136 ATGGCGACGTCGGGAACATACGTGACGCAGGTGCCGTTAAAAGGAACGGTGGAGAAACAC 195
Query 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120
| |||| | | |||| |||||| | |||||||| ||| | |||||||||||||||||
Sbjct 196 TTCAAGAGGTACAGGAACGAGAACTATCTCTTCCCTGACACTATCGGCCACCACATCCAA 255
Query 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGGAGCCATCAAGATTTGGAACTAC 180
||||||| | ||||| |||||||||||| |||| |||| |||||||||||||||||||
Sbjct 256 AGTGTTACTGTTCACGATGGCGAATGGGACACTCAAGGAGGCATCAAGATTTGGAACTAC 315
Query 181 ACA-T-GC-GATGGGAAAGC-GGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAA 236
||| | | ||||| |||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 316 ACACTCGGAGATGG-AAAGGAGGAGGTATTCAAGGAGAGGAGAGAGATAGACGATGACAA 374
Query 237 TATGGCGGT-AACGTTCAGAGGACTGGAAGGTCACGTGATGGAGCAGCTTAAAG-TGTAT 294
|| | || || ||| |||| ||||||||||||||||||||||| || ||| |||||
Sbjct 375 TAAGATAGTGAAGGTTGT-AGGATTGGAAGGTCACGTGATGGAGCAG-TTCAAGGTGTAT 432
Query 295 GACG-TC-ATCTTTCAGTTCATTCAAAAGTCCCCTGATGATAT-CATCTGTAAGATCACT 351
|| | | | ||| || || |||| || || || ||| | | |||| || ||||||
Sbjct 433 GA-GATTGA-CTTCCAATTTATTCCCAACTCTGAAGAAGAT-TGCGTCTGCAAAATCACT 489
Query 352 ATGATTTGGGAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATG-AAGTTCGT 410
||||| |||||||||| |||||||| | || || || |||| ||||||| || | | |
Sbjct 490 ATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAACTCC-T 548
Query 411 CAAGAG 416
||||||
Sbjct 549 CAAGAG 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5