BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322661
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1057 0.0
> AT2G03630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G74220.1);
Has 126 Blast hits to 126 proteins in 28 species: Archae -
0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses
- 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:1103205-1103963
FORWARD LENGTH=759
Length=759
Score = 1057 bits (572), Expect = 0.0
Identities = 703/765 (92%), Gaps = 14/765 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTCTAAACATGAAGAAGATGTGTTATCCAAACAAAAACATGATGAAGATGGaaa- 59
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1 ATGGAGTCTAAACATGAAGAACATGTGTTATCCAAACAAAAACATGATCAAGATGTAAAC 60
Query 60 aaaaCAAGGTTCATTAGACGGGGAAAATGGAGATGTTGAGCATAAAATGATGCATTCAGA 119
|||| ||||||||||||||| ||||||||||||||||||||||||| ||| | || | |
Sbjct 61 AAAA-AAGGTTCATTAGACGACGAAAATGGAGATGTTGAGCATAAAACGATACCTTTACA 119
Query 120 AGAAACAGAAACTGTAATTATTAACTCAGAATCACATTCTAGATTATCGTCGtcttcttc 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 120 AGAAACAGAAACTGTAATTATTAACTCAGAATCACATTCAAGATTATCGTCGTCTTCGTC 179
Query 180 atcttcttcgtcttcttcttcttcGTATTTATCACCGCCGAAAGATCTACCTGAAGATGT 239
| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 180 A---TCTTCGTCTTCTTCTTCTTCGTATTTATCGCCACCGAAAGATCTACCTGAAGAGGT 236
Query 240 --T-AAAGAATCATTGAATGATCCGGAGATTTCTTCACCACCTGTTCAAGTAATGGATAG 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACTAAAAGAATCATTGAATGATCCGGAGATTTCTTCACCACCTGTTCAAGTAATGGAT-- 294
Query 297 AGATGATAATAACGGAAAATATGACCCGAATAGGATTCCATCTTCGGTTTTCGAGAGAAG 356
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AGA-GATAACAACGGAAAATATGACCCGAATAGGATTCCATCTTCGGTTTTCGAGAGAAG 353
Query 357 CAAATCGAATATACCAGCTGAATGGAGCTGCACTTCGAACGAATCTCTCTTCAGTATTCA 416
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 354 CAAATCGAATGTGCCAGCTGAATGGAGCTGCACTTCGAATGAATCTCTCTTCAGTATTCA 413
Query 417 TTTAGGACACAACAGTTTCACTGGTTACGGTGGTGATTTGATGAAATCAGGTGAACTCTA 476
||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 414 TTTAGGAAACAATAGTTTCACTGGTTATGGTGGTGATTTGATGAAATCAGGTGAACTTTA 473
Query 477 TAAATCGGGAGAGTTACTCGCATACAGTCCTGGACTTCCTATGCCTCCTCCACCAGGATC 536
|||||| || |||||||| || || |||||||||||||||||||| ||| |||||||||
Sbjct 474 TAAATCCGGTGAGTTACTTGCGTATAGTCCTGGACTTCCTATGCCGCCTGTACCAGGATC 533
Query 537 AGAACCAAAACCCGT---CGAAAAACCGAAAGTTGTTGATTCAGATAAGAAAGAGGAAGT 593
|||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||
Sbjct 534 GGAACCAAAACCCGTAGTCGAAGAACCGAAAGTTGTTGAATCAGATAAGGAAGAGAAAGT 593
Query 594 TGTACTAGTAGAAGAAACGCAGACATCTTCATCTGATgaagaggaagagaagagagagag 653
|||||||||||||||||| || ||||| ||||| |||||||| |||| ||| ||||| ||
Sbjct 594 TGTACTAGTAGAAGAAACACATACATCATCATCAGATGAAGAAGAAGGGAAAAGAGAAAG 653
Query 654 ccatgagaaagaaCAACATCCCGCTGTTTCTTGGAAAACTCCTACAACTTCTTACCATTC 713
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 654 CCATGAGAAAGAACAACATCCTGCTGTTTCTTGGAAAACTCCTACAACTTCTTACCGTTC 713
Query 714 TAACCGAAGCTCAAACAGCACGCATTCCTTCTCTTTCCCAATGTA 758
||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 714 TAACCGAAGCTCAAACAGCGCGCACTCCTTCTCTTTCCCAATGTA 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5