BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322664
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03670.1 | Symbols: CDC48B | cell division cycle 48B | chr2:... 2970 0.0
> AT2G03670.1 | Symbols: CDC48B | cell division cycle 48B | chr2:1117507-1120436
FORWARD LENGTH=1975
Length=1975
Score = 2970 bits (1608), Expect = 0.0
Identities = 1744/1810 (96%), Gaps = 7/1810 (0%)
Strand=Plus/Plus
Query 2 TGGAAACCGAAAGCAGTGTCTGCGACAACATCGTCAGCGATGAGAAATGGCGAGCGGAAG 61
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 93 TGGAAACCGAAAGCAGTGTCTGCGACAACATCGCCGGCAATGAGAAATGGCGAGCGGAAG 152
Query 62 CTGAAATTGGTGGCAACGAGAGAGCTCTGCAAGCGCTTCGAGAACTCATTATCTTCCCTT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CTGAAATTGGTGGCAACGAGAGAGCTCTGCAAGCGCTTCGAGAACTCATTATCTTCCCTT 212
Query 122 TTCGTTACCCTCTCGAAGCTCGAACTCTTGGTCTCAAATGGCCTAGAGGATTGCTTCTCT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TTCGTTACCCTCTCGAAGCTCGAACTCTTGGTCTCAAATGGCCTAGAGGATTGCTTCTCT 272
Query 182 ATGGTCCTCCTGGAACCGGCAAGACAAGCTTGGTCCGTGCTGTTGTCCAGGAATGTGATG 241
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ACGGTCCTCCTGGAACCGGCAAGACAAGCTTGGTCCGTGCTGTTGTCCAGGAATGTGATG 332
Query 242 CACATTTGATTGTTTTAAGCCCTCATTCTGTACATCGAGCACATGCTGGAGAAAGCGAGA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CACATTTGATTGTTTTAAGCCCTCATTCTGTACATCGAGCACATGCTGGAGAAAGCGAGA 392
Query 302 AAGTCTTAAGGGAAGCTTTTACTGAGGCTTCTTCTCACGCTGTTTCAGACAAGCCATCTG 361
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 393 AAGTCTTAAGGGAAGCTTTCGCTGAGGCTTCTTCTCACGCTGTTTCAGACAAGCCTTCTG 452
Query 362 TGATTTTTATTGATGAAATCGATGTTCTTTGTCCTCGTCGTGATGCTAGACGAGAGCAAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 453 TGATTTTTATTGATGAAATCGATGTTCTTTGTCCTCGTCGTGATGCTAGACGAGAACAAG 512
Query 422 ATGTTCGTATTGCTTCTCAACTATTTACACTCATGGACTCAAACAAGCCTTCATCATCTG 481
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 513 ATGTTCGTATTGCTTCTCAACTGTTTACACTTATGGACTCAAACAAGCCTTCATCATCTG 572
Query 482 CACCGAA-AGTTGTTGTTGTAGCATCCACAAATAGGGTGGATGCGATTGACCCAGCGATA 540
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 573 CACC-AAGAGTTGTTGTTGTAGCATCCACAAATAGGGTGGATGCGATTGACCCAGCGCTA 631
Query 541 AGAAGGGCAGGACGATTTGATGCTTTAGTTGAAGTGAGCACGCCAAATGAGGATGATCGT 600
||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 632 AGAAGAGCGGGACGATTTGATGCTTTAGTTGAAGTGAGCACACCAAATGAGGAGGATCGT 691
Query 601 TTAAAAATCCTGCAGCTGTACACAAAGAAAGTCAATTTAGATTCTAGTGTCGATCTTCAA 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 692 TTAAAAATCCTGCAGCTGTACACAAAGAAAGTCAATTTAGATCCTAGTGTCGATCTTCAA 751
Query 661 GCCATAGCAATATCTTGCAACGGTTATGTTGGGGCAGATTTGGAAGCTTTATGTCGCGAA 720
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 752 GCCATTGCAATATCTTGCAACGGTTATGTTGGAGCAGATTTGGAAGCTTTATGTCGTGAA 811
Query 721 GCAACCATATCTGCAAGTAAAAGATCCTCAGATCCTCTTATCCTAATATCGCAAGACTTC 780
|| || |||||||||||||||||||| |||||| ||||||| |||| ||| |||||||||
Sbjct 812 GCGACAATATCTGCAAGTAAAAGATCTTCAGATTCTCTTATTCTAACATCTCAAGACTTC 871
Query 781 AAGATTGCAAAATCTGTGGTTGGTCCAAGTATAAACAGAGGCATCACAGTTGAAATCCCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 AAGATTGCAAAATCTGTGGTTGGTCCAAGTATAAACAGAGGCATCACAGTTGAAATCCCT 931
Query 841 AAAGTGACATGGGACGACGTTGGTGGTCTTAAAGACTTAAAGAAAAAGCTCCAGCAAGCT 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 AAAGTGACATGGGACGATGTTGGTGGTCTTAAAGACTTAAAGAAAAAGCTCCAGCAAGCT 991
Query 901 GTAGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCGATGCGT 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 992 GTTGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCAATGCGT 1051
Query 961 GGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCTGCTGCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1052 GGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCCGCTGCA 1111
Query 1021 AATGCTGCTCAAGCCTCTTTCTTTTCCTTAAGCTGTGCAGAGCTATTTTCTATGTATGTT 1080
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1112 AATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGCTGTGCGGAGCTATTTTCTATGTATGTT 1171
Query 1081 GGAGAAGGTGAAGCATTATTGCGGAATACATTTCAAAGAGCTCGACTTGCTTCTCCAAGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GGAGAAGGTGAAGCATTATTGCGGAATACATTTCAAAGAGCTCGACTTGCTTCTCCAAGT 1231
Query 1141 ATAATATTCTTTGATGAAGCTGATGTTGTTGCCTGTAAAAGAGGTGATGAGAGCTCAAGC 1200
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1232 ATAATATTCTTTGATGAAGCTGATGTCGTTGCCTGTAAAAGAGGTGATGAGAGCTCAAGC 1291
Query 1201 AATAGTTCTACAGTTGGAGAAAGGCTTTTATCTACACTGTTAACCGAAATGGACGGTCTT 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1292 AATAGTTCTACAGTTGGAGAAAGGCTTCTATCTACACTGTTAACCGAAATGGACGGTCTT 1351
Query 1261 GAAGAAGCAAAGGGAATCCTCGTCTTGGCTGCCACAAACCGCCCATATGCAATTGATGCT 1320
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1352 GAAGAAGCAAAGGGAATCCTCGTCTTGGCTGCCACAAACCGCCCGTATGCAATTGATGCT 1411
Query 1321 GCTCTTATGCGACCTGGTCGATTTGATCTTGTGCTATACGTGCCACCGCCTGATCTAGAA 1380
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1412 GCTCTAATGCGACCTGGTCGATTTGATCTCGTGCTATACGTGCCACCGCCTGATCTAGAA 1471
Query 1381 GCCCGGTTTGAAATACTGCAAGTGCATACACGCAACATGACACTAGGAGACGACGTCGAT 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1472 GCCCGGTTTGAAATACTGCAAGTGCATACACGCAACATGACACTAGGAGACGACGTTGAT 1531
Query 1441 CTCAGAAAAATAGCTGAAGAAACCGATCTCTTTACAGGTGCCGAGCTCGAGGGTCTATGC 1500
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1532 CTCAGAAAAATCGCTGAAGAAACCGATCTCTTCACAGGTGCCGAGCTCGAGGGTCTATGC 1591
Query 1501 AGAGAAAGCGGAACTGTCTCCCTTAGAGAAAACATCGAAGCAACCGCCGTCTTCAATCGC 1560
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 1592 AGAGAAAGCGGAACTGTCTCACTTAGAGAAAACATCGCAGCAACCGCTGTCTTCAATCGC 1651
Query 1561 CATTTCCAAACCGCTAAAAGCTCACTTAAACCCGCATTGACAATTGAAGAAGTCGAAACT 1620
|||||||||||||| |||||||| |||||||| || || ||||| |||||||||||||||
Sbjct 1652 CATTTCCAAACCGCAAAAAGCTCGCTTAAACCAGCGTTAACAATCGAAGAAGTCGAAACT 1711
Query 1621 TATTCATCATTCAGGAAGGCG---AAAAGATCTGATTCAAAACCGATTCCGATTAACAAA 1677
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1712 TATTCATCATTCAGGAAGGCGGCGAAAAGATCTGATTCGAAACCGATTCCGATTAACAAA 1771
Query 1678 AAGAAGGCGACATCCACTGTTTTCGGATTCTCATGGCAAATT-GGTGTTTTGAGCTTAAT 1736
||||||||||| ||||| || |||||||||||||||||| || ||||||||||||||| |
Sbjct 1772 AAGAAGGCGACTTCCACCGTCTTCGGATTCTCATGGCAA-TTAGGTGTTTTGAGCTTATT 1830
Query 1737 ATTACTTGCTACTGGAAACTATTACTTCAACCACACTAAACATGATTTACGAGTAGCGTC 1796
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 1831 GTTGCTTGCTACTGGAAACTATTACTTCAACCACACTAAACATGAATTACTAGTAGCTTC 1890
Query 1797 TGCTACATGA 1806
||||||||||
Sbjct 1891 TGCTACATGA 1900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5