BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322665

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03680.1 | Symbols: SPR1, SKU6 | spiral1 | chr2:1120800-1122...   606    4e-173


> AT2G03680.1 | Symbols: SPR1, SKU6 | spiral1 | chr2:1120800-1122055 
FORWARD LENGTH=659
Length=659

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 353/364 (97%), Gaps = 5/364 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTCGTGGAAACAGCTGTGGTGGAGGTCAAAGCTCATTGGATTATCTCTTTGGTGGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||
Sbjct  95   ATGGGTCGTGGAAACAGCTGTGGTGGAGGTCAAAGCTCATTGGATTATCTC-TT--TGGT  151

Query  61   GGTGACGCTCCTGCTCCTAAGCCAGTTCCAGCTCCTCGTCCCGCTCCTACTGAAG-CTAA  119
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  152  GGTGACGCTCCTGCTCCTAAGCCAGTTCCAGCTCCTCGTCCCGCTCCTACTG-AGTCTAA  210

Query  120  CAACGGAACTGCACCACCAGTAACAGCTGCGACCGCAACCGCACTCACGACTGCTACTAC  179
            ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  211  CAACGGACCTGCACCACCAGTAACAGCTGTGACTGCAACCGCACTCACGACTGCTACTAC  270

Query  180  TTCTGTTGAGCCAGCAGAGCTTAACAAGCAGATTCCTGCTGGTATCAAAACTCCTGTTAA  239
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  271  TTCTGTTGAGCCTGCAGAGCTTAACAAGCAGATTCCTGCTGGTATCAAAACTCCTGTTAA  330

Query  240  CAACTATGCCAGAGCTGAAGGACAGAACACCGGCAACTTCCTCACTGACCGTCCTTCGAC  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  331  CAACTATGCCAGAGCTGAAGGACAGAACACCGGCAACTTCCTCACTGACCGTCCTTCGAC  390

Query  300  CAAAGTTCATGCAGCTCCTGGAGGAGGATCATCCTTGGATTATCTCTTCACTGGTGGCAA  359
            ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  391  CAAAGTTCACGCAGCTCCGGGAGGAGGATCATCCTTGGATTATCTCTTCACTGGTGGCAA  450

Query  360  GTAA  363
            ||||
Sbjct  451  GTAA  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5