BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322675
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03800.1 | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr... 1598 0.0
> AT2G03800.1 | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr2:1156713-1158934
FORWARD LENGTH=1262
Length=1262
Score = 1598 bits (865), Expect = 0.0
Identities = 970/1022 (95%), Gaps = 2/1022 (0%)
Strand=Plus/Plus
Query 64 AAAGCAAACGCAACTCCTATCAAATCGCTTCAAAACGCCGATTTTCGCGTTACAGTAACA 123
|||||||||||||||| |||| |||||||| ||||||| || ||||||||||||||||
Sbjct 1 AAAGCAAACGCAACTCATATCCAATCGCTTTTAAACGCCAATAATCGCGTTACAGTAACA 60
Query 124 ACTCGAAAAATGGTGACACTGATCGTAGCCACCACCTCCGATCCAGCGTCGATCAATCCT 183
|||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| |||
Sbjct 61 ACTCGAAAAATGGTAACACTAATCGTGGCCACCACCGCCGATCCAGCGTCGATCAACCCT 120
Query 184 GCAGCGGCGCTTCTCGCCATGCCCGGTTGGATCGCCGGACCTATCTTACCGCCGGACATA 243
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GCGGCGGCGCTTCTCGCCATGCCCGGTTGGACCGCCGGACCTATCTTACCGCCGGACATA 180
Query 244 AAGAGTTTCAGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTTAAAGAA 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AAGAGTTTTAGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTAAAAGAA 240
Query 304 GACGATCTTGATTTACGTTGGGAAGAAGCTACCGGTGAAGTTATTGATGAAGTCATCTTC 363
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GACGATCTCGATTTACGTTGGGAAGAAGCTACCGGTGAAGTTGTTGATGAAGTCATCTTC 300
Query 364 CTCAGCCGTCACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCAGCCGTCACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTG 360
Query 424 CTTCATCTAAAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCAGGATGGGCGGCGTTG 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CTTCATCTAAAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCTGGATGGGCGGCGTTG 420
Query 484 CCAAACCCTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGT 543
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCAAGCACTAGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGT 480
Query 544 TTAGTTCCTGAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTAGTTCCTGAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAG 540
Query 604 CCAACGATGTTTTTGGAGATTGGTAGTACAGAGGAATACTGGAAGAGAG-ATGATGCGGC 662
||||||||||||||||||||||||||||| ||||||||||||||||| | | || || ||
Sbjct 541 CCAACGATGTTTTTGGAGATTGGTAGTACCGAGGAATACTGGAAGAG-GCAAGACGCAGC 599
Query 663 TCAAGTCATGGCTCTTTTAATGTGGGAAGGACTTGGGCTAGGAGGCGGTGAAGCCGTGGG 722
|||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||
Sbjct 600 TCAAGTCATGGCTCTTTTAATGTGGGAAGGTCTTGGGCTAGGAGGCAGTGAAGAAGTAGG 659
Query 723 GAACTGGAACAGTGAAACCGGAAAGAGGAAAGTTCTCTTAGGGATTGGAGGTGGACACTA 782
||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 660 GAAGTGGAAAAGTGAAACCGGAAAGAGGAAAGTTCTTTTAGGCATTGGAGGTGGACATTA 719
Query 783 TGCTCCTCGTCACATGGATATAGTTTTGAAAGACGATATTTGGGTAGGCCATTTACTTTC 842
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 720 TGCTCCTCGTCACATGGATATAGCTTTGAAAGATGATATTTGGGTAGGCCATTTGCTTTC 779
Query 843 TGGATACTCATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGTAGAGAATTA 902
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 TGGATACTCATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGGAGAGAATTA 839
Query 903 CATTGGTGGAAATTGGAGACAGTCTATTAAGGCAGCATTTGAAGCTACTAAAGCAGCATT 962
||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 840 CATTGGTGGAAATTGGAGACAATCAATTAAGGCAGCATTTGAAGCTACTAAAGCATCATT 899
Query 963 CCCAGGAGGCGAAATATTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAA 1022
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCCCGGAGGCGAGATCTTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAA 959
Query 1023 GGCAATTACAGAGTTTTTGGGTGAAGAGAGTATCAATGTTGGGAAGCCAAACGATTTCAC 1082
||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 960 GGCCATTACAGAGTTTTTAGCAGAAGAGAGCATCAATGTTGGGAAGCCAAACGATTTCAC 1019
Query 1083 AT 1084
||
Sbjct 1020 AT 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5