BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322676
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03820.1 | Symbols: | nonsense-mediated mRNA decay NMD3 fam... 2569 0.0
> AT2G03820.1 | Symbols: | nonsense-mediated mRNA decay NMD3 family
protein | chr2:1164957-1167029 REVERSE LENGTH=1841
Length=1841
Score = 2569 bits (1391), Expect = 0.0
Identities = 1496/1547 (97%), Gaps = 5/1547 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGTAATGGATGAATCAGGCATGTTTAACGTTCAACAAACCATTGGAAGTGTTTTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 99 ATGTCAGTAATGGATGAATCAGGCATGTTTAACGTTCAACAAACCATTGGAAGTGTATTG 158
Query 61 TGTTGCAAGTGTGGTGTTCCCATGGCACCAAACGCAGCCAACATGTGTGTGAATTGTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TGTTGCAAGTGTGGTGTTCCCATGGCACCAAACGCAGCCAACATGTGTGTGAATTGTCTT 218
Query 121 CGTTCCGAAGTCGATATCACCGAAGGTTTACAGAAGAGTATTCAGATCTTCTATTGCCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CGTTCCGAAGTCGATATCACCGAAGGTTTACAGAAGAGTATTCAGATCTTCTATTGCCCT 278
Query 181 GAATGTACTTGTTACTTACAACCACCAAAGACTTGGATCAAATGTCAATGGGAATCTAAA 240
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 279 GAATGCACTTGTTACTTACAGCCACCAAAGACTTGGATCAAATGTCAATGGGAATCTAAA 338
Query 241 GAGCTCTTAACTTTTTGTATCAAGAGGTTGAAGAATCTTAATAAGGTTAAGCTGAAGAAC 300
||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 339 GAGCTTTTGACATTTTGTATCAAGAGGTTGAAGAATCTCAATAAGGTTAAGCTGAAGAAC 398
Query 301 GCGGAATTCGTTTGGACTGAGCCTCATTCCAAGAGGATTAAGGTTAAGTTGACTGTTCAA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GCTGAATTCGTTTGGACTGAGCCTCATTCCAAGAGGATTAAGGTTAAGTTGACTGTTCAA 458
Query 361 GCTGAGGTTCTTAACGGTGCTGTTCTTGAGCAGTCTTATCCTGTTGAGTATACGGTTAGG 420
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 459 GCTGAGGTTCTTAATGGTGCTGTTCTTGAACAGTCTTATCCTGTTGAGTATACGGTTAGG 518
Query 421 GATAATCTGTGTGAGTCGTGTTCAAGGTTTCAGGCTAATCCTGATCAGTGGGTTGCTTCG 480
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 519 GATAATCTGTGCGAGTCGTGTTCGAGGTTTCAGGCTAATCCTGATCAGTGGGTTGCTTCT 578
Query 481 GTTCAGCTTAGGCAGCATGTTTCACATAGGAGGACTTTCTTTTATCTCGAACAGTTGATT 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 579 ATTCAGCTTAGGCAGCATGTTTCGCATAGGAGGACTTTCTTTTATCTCGAACAGTTGATT 638
Query 541 CTTAGGCACGATGCTGCTTCACGTGCCATTAGAATCCAGCAGGTGGATCAGGGGATTGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CTTAGGCACGATGCTGCTTCACGTGCCATTAGAATCCAGCAGGTGGATCAGGGGATTGAT 698
Query 601 TTCTTCTTTGGGAATAAAAGTCATGCTAATAGCTTTGTTGAGTTTCTGCGGAAAGTTGTC 660
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 699 TTCTTCTTTGGGAATAAAAGTCATGCTAATAGCTTTGTGGAGTTTCTGAGGAAAGTTGTC 758
Query 661 CCCATTGAATATCGTCAGGACCAACAACTGGTGTCTCATGATGTCAAGAGCAGTTTGTAC 720
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 759 CCCATTGAATACCGTCAGGACCAACAGCTGGTGTCTCATGATGTGAAAAGCAGTTTGTAC 818
Query 721 AACTATAAGTACACTTACTCTGTTAAGATCTGTCCTGTTTGCCGTGAGGATCTTGTATGC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 819 AACTATAAGTACACTTACTCTGTTAAGATCTGTCCTGTTTGCCGTGAGGATCTTGTTTGC 878
Query 781 TTGCCTTCAAAAGTTGCTAGCGGCTTGGGGAACCTTGGTCCACTTGTGATTTGCACAAAA 840
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 879 TTGCCTTCTAAAGTTGCTAGCGGCTTGGGGAACCTTGGTCCACTTGTGGTTTGCACAAAA 938
Query 841 GTATCTGATAACATAACTCTACTTGATCCGAGAACTCTAAGGTGTGCCTTCTTGGACGCG 900
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 939 GTCTCTGATAATATCACTCTACTTGATCCGAGAACTCTAAGGTGTGCCTTCTTGGATGCG 998
Query 901 AGACAGTACTGGAGGTCTGGGTTCCGATCTGCGCTCACCAGTAGACAACTTGTCAAGTAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AGACAGTACTGGAGGTCTGGGTTCCGATCTGCGCTCACCAGTAGACAACTTGTCAAGTAC 1058
Query 961 TTTGTGTTCGATGTTGAACCACCTGTTAGTGAAGCGACTGTTGGCGGACAAAAGTACGCT 1020
|||||||| |||||||| ||||||||| |||||||||||||||| || ||||||||||||
Sbjct 1059 TTTGTGTTTGATGTTGAGCCACCTGTTGGTGAAGCGACTGTTGGTGGGCAAAAGTACGCT 1118
Query 1021 CTATCCTATGTCCAGATAGCCCGTGAATCAGACATTGGTAAGATGTTTTATGTCCAAACT 1080
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 CTTTCCTATGTCCAGATTGCCCGTGAATCAGACATTGGTAAGATGTTTTATGTCCAAACT 1178
Query 1081 CATCTAGGACACATTCTGAAACCTGGGGATCAAGCTCTGGGTTATGACATCTACGGAGCC 1140
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1179 CATCTTGGACACATTCTGAAACCTGGGGATCAAGCTTTGGGTTATGACATCTACGGAGCT 1238
Query 1141 AATGTGAACGACAATGAAATGGAGAAATACCGTCTGAGTGTGAAGAATGGGCTTCCAGAA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1239 AATGTGAACGACAATGAAATGGAGAAATACCGTCTGAGTGTGAAGAATGGGCTTCCTGAA 1298
Query 1201 GCAATTCTGATCAAGAAATGTTACGAGGAGCAGAGAGAGAGGAAGCAGAAGAAATCCCGT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GCAATTCTGATCAAGAAATGTTACGAGGAGCAGAGAGAGAGGAAGCAGAAGAAATCCCGT 1358
Query 1261 AACTGGAAGCTCAAGTCGCTTCCAATGGAAATGGATGATTCAAGAGGCAGGGTTGATCCA 1320
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 AACTGGAAACTCAAGTCGCTTCCAATGGAAATGGATGATTCAAGAGGCAGGGTTGATCCA 1418
Query 1321 GAGAAGACAGACAAGGAATACGAAGAGTTTTTGAGGGATCTTGAAGAAAACCCTGAGCTA 1380
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GAGAAGACAGACAAAGAATACGAAGAGTTTTTGAGGGATCTTGAAGAAAACCCTGAGCTA 1478
Query 1381 AGGTTCAACATATCCTTGTACAGGGACAAGGATTATCAAGCTTCTGAGACTGCTTCAATG 1440
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 AGGTTCAACATATCTTTGTACAGGGACAAGGATTATCAAGCTTCTGAGACTGCTTCAATG 1538
Query 1441 ACAGATGGAGAAGGTGCACCATCTGTTCCAATTGAGGAGTTGCTTGCTGACCTTGACCTA 1500
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1539 ACAGATGGAGAAGGTGCACCATCTGTTCCAATTGAAGAGTTGCTTGCTGACCTTGACCTA 1598
Query 1501 AG-TGAGGAGGAAGAAGACGATGATGATGACGAGGAGGACATGGCTG 1546
|| | | ||||||||||||||||||| |||||| ||||||||||
Sbjct 1599 AGCTTTG-AGGAAGAAGACGATGATGA---CGAGGACGACATGGCTG 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5