BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322682

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03913.1 | Symbols:  | Cysteine-rich protein | chr2:1197885-...   278    2e-74
  AT2G03937.2 | Symbols:  | Defensin-like (DEFL) family protein |...   165    2e-40


> AT2G03913.1 | Symbols:  | Cysteine-rich protein | chr2:1197885-1198249 
FORWARD LENGTH=222
Length=222

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 194/215 (90%), Gaps = 4/215 (2%)
 Strand=Plus/Plus

Query  10   ACTTATGTGAttttttttCTTGTAGTGATATTGATAAACTCATTGTTTAACTCTAACGTT  69
            |||| | |||||||| |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct  10   ACTTCTATGATTTTTGTTCTTGTAGTGATACTGATAAACTCATTGTTTAACTTTAACGTT  69

Query  70   TTGGCTTCATCGGTGATTGAAACATCAAACAATGATGTGTGCTATGCACCATGTACACAG  129
            ||||||||||| ||||| |||||| |||| ||||||||||||| | | |||||||||| |
Sbjct  70   TTGGCTTCATCCGTGATCGAAACAACAAAAAATGATGTGTGCTCTACTCCATGTACACGG  129

Query  130  AGGTAT-AAACTTTATGAATGTTGGCATGACTGCTTGCACAAGAGGTATAATGATGGA-G  187
            ||||||  ||| |||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct  130  AGGTATGGAAC-TTATGAATGTTGGCATGACTGCTTGCACGAGAGGTATAACGATGGAGG  188

Query  188  CGTGTGTTGATGGACGATGTTGTTGCAAAAAATGA  222
            | ||||||||||||||||||||||||||||| |||
Sbjct  189  C-TGTGTTGATGGACGATGTTGTTGCAAAAAGTGA  222


> AT2G03937.2 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:1224389-1224753 FORWARD LENGTH=229
Length=229

 Score =  165 bits (89),  Expect = 2e-40
 Identities = 172/211 (82%), Gaps = 10/211 (5%)
 Strand=Plus/Plus

Query  16   GTGAttttttttCTTGTAGTGATATTGATAAACTCATTGTTTAACTCTAACGTTTTGGCT  75
            |||| ||||||| || ||||||| || | ||| |||||||  |||||  ||||||||| |
Sbjct  25   GTGA-TTTTTTT-TTCTAGTGATGTTAACAAAGTCATTGTCCAACTCCGACGTTTTGGTT  82

Query  76   TCATCGGTGATTGAAACATCAAACAATGATGTGTGCTATGCACCATGTACACAG-AGGTA  134
            ||||| |||||||| |||||||| ||||||||||||| |  |||||||||| || |||||
Sbjct  83   TCATCAGTGATTGAGACATCAAAAAATGATGTGTGCTTTATACCATGTACA-AGAAGGTA  141

Query  135  TAAACTTTATGAATGTT-GGCATGACTGCTTGCACAAGAGGTAT-AATGATGGAGCG-TG  191
               |  ||  |||||||  | ||||||| |||  |||||  | | |||||||||| | ||
Sbjct  142  CGGAGATTGGGAATGTTATG-ATGACTGTTTGGGCAAGA-ATTTCAATGATGGAG-GATG  198

Query  192  TGTTGATGGACGATGTTGTTGCAAAAAATGA  222
            |||||||||||||||||||||||||||||||
Sbjct  199  TGTTGATGGACGATGTTGTTGCAAAAAATGA  229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9953014302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5