BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322683

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03931.1 | Symbols:  | Defensin-like (DEFL) family protein |...   350    5e-96
  AT2G03936.1 | Symbols:  | Defensin-like (DEFL) family protein |...   268    1e-71


> AT2G03931.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:1214428-1214843 FORWARD LENGTH=228
Length=228

 Score =  350 bits (189),  Expect = 5e-96
 Identities = 211/222 (95%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1    ATGAATATCACAAAAGCTTATGTGAtttttttCCTTGTAGTGATATTAACAAACTCATTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAATATCACAAAAGCTTATGTGATTTTTTTCCTTGTAGTGATATTGACAAACTCATTG  60

Query  61   TCCAACTCCGGCGTTTTGGCTTCATCGGTGATGGAGACATCAAAAAATGATGTATGCTCT  120
            |||||||| | || |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  61   TCCAACTCTGACGCTTTGGCTTCATCGGTGATTGAGACAACAAAAAATGATGTATGCTCT  120

Query  121  ACACCATGTACAATAAGGTATGGAACGTTTGAATGCTTTCATGACTGTATCCTCGAGCAT  180
            |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct  121  ACACCATGTACAATAAGGTACGGAACATTTGAATGCTTTCAGGACTGTATCCTCGACCAT  180

Query  181  TACAGAGATGGAAATTGTATTAATGGAAGATGTTGTTGCAAA  222
            | ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTCAGAGATGGAAATTGTATTAATGGAAGATGTTGTTGCAAA  222


> AT2G03936.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:1221111-1221522 FORWARD LENGTH=246
Length=246

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 214/243 (88%), Gaps = 21/243 (9%)
 Strand=Plus/Plus

Query  1    ATGAATATCACAAAAGCTTATGTGAtttttttCCTTGTAGTGATATTAACAAACTCATTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  1    ATGAATATCACAAAAGCTTATGTGATTTTTTTCCTTGTAGTGATATTGACAAACTCACTG  60

Query  61   TCCAACTCCGGCGTTTTGGCTTCATC-G------------GTG----A-TG---GAGACA  99
            |||||||||| ||||||||||||||| |            |||    | ||   ||||||
Sbjct  61   TCCAACTCCGACGTTTTGGCTTCATCGGATATTTATATATGTGTTACAGTGATTGAGACA  120

Query  100  TCAAAAAATGATGTATGCTCTACACCATGTACAATAAGGTATGGAACGTTTGAATGCTTT  159
             |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  121  ACAAAAAATGATGTATGCTCTACACCATGTACAATAAGGTACGGAACATTTGAATGCTTT  180

Query  160  CATGACTGTATCCTCGAGCATTACAGAGATGGAAATTGTATTAATGGAAGATGTTGTTGC  219
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  CATGACTGTATCCTTGAGCATTACAGAGATGGAAATTGTATTAACGGAAGATGTTGTTGC  240

Query  220  AAA  222
            |||
Sbjct  241  AAA  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5