BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322690

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04031.1 | Symbols:  | Protein of unknown function (DUF784) ...   372    2e-102


> AT2G04031.1 | Symbols:  | Protein of unknown function (DUF784) 
| chr2:1304160-1304779 REVERSE LENGTH=620
Length=620

 Score =  372 bits (201),  Expect = 2e-102
 Identities = 273/308 (89%), Gaps = 4/308 (1%)
 Strand=Plus/Plus

Query  139  ATAGAGCTTGCTCACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGT  198
            ||||||||||||||||  || ||| |||| |||||||| |||||||||||||||||||||
Sbjct  151  ATAGAGCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGT  210

Query  199  CCCAAATGCGAAGATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGAT  258
             |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct  211  TCCAAATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAAT  270

Query  259  GAATGTTGTCGTGATGTTTTGAATACTGGCAAAGATTGCCATCTCGCAATGGTAAAAATC  318
            |||||||||| |||| | ||||| |||||||||||||| || || ||| |||| ||||||
Sbjct  271  GAATGTTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATC  330

Query  319  ATATTCTCTAC-ATATGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAACA  377
            |||||||| || | |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  331  ATATTCTCCACGA-ATGATTATAAAAAAATTGCATCTAAGGCTATTCCAAAAAGTAAACA  389

Query  378  GGCATGGAACGATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTTCG  436
            | ||||||| |||||| ||||||||||||| |   | |||||||||||||||||||||||
Sbjct  390  GACATGGAATGATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCG  448

Query  437  AGCCGTAA  444
            | || |||
Sbjct  449  AACCTTAA  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5