BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322693

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04046.1 | Symbols:  | Defensin-like (DEFL) family protein |...   300    7e-81


> AT2G04046.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:1315860-1316296 FORWARD LENGTH=333
Length=333

 Score =  300 bits (162),  Expect = 7e-81
 Identities = 192/207 (93%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  157  CTTCCCTGCTAGGGAAGGCCACCTCTATGTATAAAGGGACAATGCAAATGCACCGCTTCA  216
            |||||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct  127  CTTCCCTGCTTGGGAAGGCCACCTCTATGTATAAATGGACAATGCAAATGCACCACTACA  186

Query  217  TTGACTCATCAAGAAAAACTCGATAACCTAAGGAAAATGAATGATGCTAAGACATGCAAG  276
            ||||| ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct  187  TTGACACATCAAGCAAAACTCGATAACTTAAGGACAATGAATGATGCTAAGACATGCAAG  246

Query  277  CAGACGAGTGATTGCGATCCTCGTATGAGATATTCTTGTGTCTCGGGATCTTTTATATGT  336
             | ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct  247  TACACGAGTGATTGTGATCCACGTATGAGATATTCTTGTGTCTCGGGATCTTATATATGT  306

Query  337  TTGAATGGCTTTTGTACTTGTACCTAG  363
            |||||||| |||||||||||||| |||
Sbjct  307  TTGAATGGTTTTTGTACTTGTACGTAG  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5