BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322718
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25740.1 | Symbols: MAP1B, MAP1C | methionine aminopeptidase... 1537 0.0
> AT3G25740.1 | Symbols: MAP1B, MAP1C | methionine aminopeptidase
1C | chr3:9397786-9399762 FORWARD LENGTH=1164
Length=1164
Score = 1537 bits (832), Expect = 0.0
Identities = 968/1034 (94%), Gaps = 8/1034 (1%)
Strand=Plus/Plus
Query 1 ATGTTGCAGAAGATTTCTCAGTCTCGTTCTTTATTTAACGGCGAT-AAATTAACGCCGTC 59
|||||||||||||||||||||||| |||||||| |||||||||| || |||| |||||
Sbjct 21 ATGTTGCAGAAGATTTCTCAGTCTATTTCTTTATGTAACGGCGATCAATTTAA-GCCGTT 79
Query 60 GAGATATTTCGCCGGAGCTCCGACTAACTT-ATTCTCTTTCCCTCTCTCAGTCAATAAGA 118
| ||| |||||||||||||||| ||||| | |||||| ||||||||||| ||| ||||
Sbjct 80 AATATACCTCGCCGGAGCTCCGACGAACTTCA-TCTCTTCCCCTCTCTCAGGCAAGAAGA 138
Query 119 AATCATCTTCTCTGAGAATTAAAAGGATTCAACAATTTCAAAGTACATTAGAAGATAGAA 178
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 139 AATCATCTTCTCTGAGAATTAAAAGGATACAACAACTTCAAAGTACATTAGAAGATAGAA 198
Query 179 TTAATCCACCTCTAGTATGTGGAAGAGTATCGCCTCGTCTTCGTGTTCCTGATCATATAC 238
| |||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 199 TAAATCCACCACTAGTATGTGGAACAGTATCGCCACGTCTTAGTGTTCCTGATCATATAC 258
Query 239 CAAAGCCTCAATATCTTGAGTCTAGCAAAGTACCA-ATGATATCAAGTGAGTTACAGATT 297
|||||||| |||| |||||||||||||||| ||| | |||||||||||| |||||||||
Sbjct 259 TAAAGCCTCTATATGTTGAGTCTAGCAAAGTTCCAGA-GATATCAAGTGAATTACAGATT 317
Query 298 CCTGACTCTAAT-GGCATTGTGAAAATGAAGAAAGCGTGCAAGCTCGCGGCTGGTGTGTT 356
||||||||| || |||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 318 CCTGACTCT-ATAGGCATTGTGAAAATGAAGAAAGCGTGTGAGCTCGCGGCTCGTGTATT 376
Query 357 AGACTATGCAGGAACTTTGGTTAGACCGTTTGTTACTACAGATGAAATTGACAAGGCAGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 377 AGACTATGCAGGAACTTTGGTTAGACCGTTTGTTACTACAGATGAAATTGATAAAGCAGT 436
Query 417 GCATCAGATGGTTATTGAGTCTGGTGCTTATCCTTCACCTCTTGGTTATGGTGGGTTTCC 476
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||
Sbjct 437 GCATCAGATGGTTATTGAGTTTGGTGCATATCCTTCACCTCTTGGATATGGTGGATTTCC 496
Query 477 GAAAAGTGTTTGTACATCGGTTAATGAATGTATGTATCACGGGATTCCCGATTCTCGTCC 536
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 497 TAAAAGTGTTTGTACATCGGTTAATGAATGTATGTTTCACGGGATTCCCGATTCTCGTCC 556
Query 537 ATTACAGAATGGAGATATAATAAACATCGATGTCGCGGTTTACTTGGATGGATATCATGG 596
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 557 GCTACAGAATGGAGATATTATAAACATCGATGTTGCGGTTTACTTGGATGGGTATCATGG 616
Query 597 AGATACGTCAAAGACTTTCTTATGTGGAGACGTCAATGAAAGCCTTAGACAACTTGTGAA 656
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 617 AGATACGTCAAAGACTTTCTTATGTGGAGACGTCAATGGAAGCCTTAAACAACTTGTCAA 676
Query 657 GGTGACAGAAGAATGCTTGGAGAAAGGTATATCGGTTTGTAAAGATGGAGCAAGCTTCAA 716
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GGTCACAGAAGAATGCTTGGAGAAAGGTATATCGGTTTGTAAAGATGGAGCAAGCTTCAA 736
Query 717 ACAAATCGGGAAGATAATCAGTGAGCATGCTGCAAAGTATGGCTATAATATGGAGCGTTT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 737 ACAAATCGGGAAGATAATCAGTGAGCATGCTGCAAAGTATGGCTATAATATGGAGCGATT 796
Query 777 CATCGGTCATGGTGTAGGAATGGTATTACACTCGGAACCTCTTATATATCTTCATAGTAA 836
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 797 CATCGGTCATGGTGTAGGAACGGTATTACACTCGGAACCTCTTATATATCTTCATAGTAA 856
Query 837 CTATGATTATGAACTTGAATATATGATTGAAGGTCAAACTTTTACGCTCGAACCAATTCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CTATGATTATGAACTTGAATATATGATTGAAGGTCAAACTTTTACGCTCGAACCAATTCT 916
Query 897 CACAATTGGAACGACCGAGTTTGTAATGTGGCCAGACAAATGGACAATTGTGACAGCAGA 956
||| |||||||| || |||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 917 CACCATTGGAACAACAGAGTTTGTAACATGGCCTGACAAATGGACAATTGTGACCGCAGA 976
Query 957 TGGTGGTCCGGCCGCACAGTTTGAGCATACAATTCTTATTACCACAACTGGTGCAGAAAT 1016
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 977 TGGTGGTCCGGCCGCACAGTTTGAGCATACAATTCTTATTACCACCACTGGTGCAGAAAT 1036
Query 1017 TCTAACCATTTCAT 1030
||| ||||| ||||
Sbjct 1037 TCTCACCATATCAT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5