BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322721
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25790.1 | Symbols: | myb-like transcription factor family ... 1596 0.0
> AT3G25790.1 | Symbols: | myb-like transcription factor family
protein | chr3:9413127-9415003 FORWARD LENGTH=1195
Length=1195
Score = 1596 bits (864), Expect = 0.0
Identities = 1000/1065 (94%), Gaps = 12/1065 (1%)
Strand=Plus/Plus
Query 1 ATGATTAAGAACTTAAGTACTATGAAGAATTACAATCAGAAACGTGAAAGATGTTGCGAG 60
||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 70 ATGATCAAGAACTTAAGTAATATGAAGAATGACAATCAGAAACGTGAAAAATGTTGCGAG 129
Query 61 TTCATCGAAGCCCTTGAAGAAGAACGCCGCAAGATCAATGTCTTCCAACGCGAGTTTCCT 120
| ||||||||| || ||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 130 TACATCGAAGCTCTCGAAGAAGAACGTCGCAAGATCAATGTTTTCCAACGCGAGCTTCCT 189
Query 121 CTTTGCTTAGAGCTCGTGACACAAGCGATTGAGGCGTATAAGAGGGAGATATCAGGGACG 180
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTTTGCGTAGAGCTCGTGACTCAAGCGATTGAGGCGTATAAGAGGGAGATATCAGGGACG 249
Query 181 ACGACGAATAACTTATACGGACAATCGGAGTGCTCAGAGCAGACAACCGGAGAATGTGGG 240
||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 250 TCGACGGATAACTTATACGGACAGTCGGAGTGCTCAGAGCAGACCACCGGAGAATGTGGG 309
Query 241 CGCATCTTGGATCTGTTCATACCAATCAAACACTCTTCGACCTCCATAGAAGA-G-G-TT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 310 CGCATCTTGGATCTGTTCATACCAATCAAACACTCTTCGACCTCCATAGAAGAAGAGGTT 369
Query 298 GATGACAAAGATCATGATGATGAAGAACACGAATCTCATGAAACCGACATAGATTTTGAT 357
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 370 GATGACAAAGATGATGATGATGAAGAACACCAGTCTCATGAAACCGACATAGATTTTGAT 429
Query 358 GACAAGAACATGAAATCTGAATGGCTTAAGTCTGTTCAGCTCTGGAACCAATCCGACATT 417
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 430 GACAAGAACATGAAATCTGAATGGCTCAAGTCTGTTCAGCTCTGGAACCAATCCGACGCA 489
Query 418 GTTGTTTCTAATA---GACAGGATTGCTCACAAGAAAAGACAGAGACGCTGGTAGAGTTG 474
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 490 GTTGTTTCTAATAATAGACAGGATCGCTCACAAGAAAAGACAGAGACGCTGGTAGAGTTG 549
Query 475 ATAAATATAAACGATGAAGCAGCGGAGAAAAACAACAACATAGAATCACCGGCGACTACT 534
||||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 550 ATAAAAATAAACGATGAAGCAGCGAAGAAAAACAACAACATAAAATCACCGGTGACTACT 609
Query 535 AGCG--G-TGGCAGTGGCCGTGGCAGTGGCAGAAGAGGGCAGAGAAAGCATAGGCGGTGT 591
|||| | |||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 610 AGCGATGGTGGCAGTGGCGGTGGCGGTGGCAGAAGAGGGCAGAGAAAGAATAGGCGGTGT 669
Query 592 TGGTCGCAAGAGTTACACAGAAGCTTCTTGAGCGCTCTTAAACAACTTGGTGGCCCTCAT 651
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 670 TGGTCGCAAGAGTTACACAGACGCTTCTTGAACGCTCTTAAACAACTTGGTGGCCCTCAT 729
Query 652 GTAGCTACGCCGAAACAGATAAGAGAGCTAATGAAGGTTGATGGGTTAACAAATGATGAA 711
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 730 GTAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAA 789
Query 712 GTCAAAAGTCATTTACAGAAATATAGGCTGCATGCAAGACGGCCTAGCCAAACAACACCT 771
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 790 GTCAAAAGTCATTTACAGAAATATAGGCTGCATGCAAGACGGCCAAGCCAAACAACACCG 849
Query 772 AACAACAAAAACTCTCAAACGCAACATTTCGTGGTGGTTGGTGGAATATGGATCCCACAG 831
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 850 AACAACAGAAACTCTCAAACGCAACATTTCGTGGTGGTTGGTGGAATATGGGTCCCACAG 909
Query 832 ACTAACCACTCCACGGCCAACGCAGTCAACGCCCTCGCATCGGGTGAGACCACCACCGGG 891
|||||||| || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 910 ACTAACCATTCAACGGCCAACGCAGTCAACGCCGTCGCATCGGGTGAGACCACC---GGG 966
Query 892 ATTTACGGGCCTATGGTCAGTCCGTTACCGTCCGAGTGGCCGAGCCATTCCAATTTTGGT 951
||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct 967 ATTTATGGGCCTATGGTCAGTTCGTTGCCGTCCGAGTGGCCGAGGCATTCCAATTTTGGT 1026
Query 952 GGGACGATTTTGGATGATAGATCAAGATGCTCTAACAAAGGAATTTTTCGGTGTAGCTCA 1011
||| ||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1027 AGGAAGATTTCGGAAGATAGATCAAGATGCTCTAACAACGGATTTTTTCGGTGTAGCTCA 1086
Query 1012 CCAGCTATGTCTTCTTCTACTCGTACAAAGACGAAAGATGCAAAA 1056
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1087 CCAGCTATGTCTTGTTCTACTCGTACAAAGACGAAAGATGCAAAA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5