BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322722
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25810.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 407 3e-113
AT3G25830.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-li... 226 9e-59
AT3G25820.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-li... 226 9e-59
> AT3G25810.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr3:9430767-9433844 FORWARD
LENGTH=1835
Length=1835
Score = 407 bits (220), Expect = 3e-113
Identities = 248/262 (95%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 1 ATGCATGAGACCGGAGTTTCGGAGGAAGAGGCACGCGCACATGTGCAGCAGATGATAAGT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1569 ATGCATGAGACCGGAGTTTCGGAGGAAGAGGCACGCACACATGTGCAGCAGATGATAAGT 1628
Query 61 CTCACTTGGGACGAGATGAACTATGAAGCACGAACGGCGGCACGCAGTTCTTCCTTACTT 120
| ||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct 1629 CACACGTGGGACGAGATGAACTATGAAGCAAGAACAGCGGCACGCAGTTCTTCGTTACTT 1688
Query 121 TCTCGACGTTTTGTGGAAACTGCAATGAACTTGGCACGCATGTCGCAATGCATGTATCAA 180
|||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||
Sbjct 1689 TCTCGACGTTTTGTTGAAACTGCAATGAACCTGGCACGTATGTCGCAGTGCATGTACCAA 1748
Query 181 CATGGCGATGGTCATGGCTGTCCTGACAAAGCCAAGATCGTTGATCGTGTCCAAACCTTG 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1749 CATGGCGATGGTCATGGATGTCCCGACAAAGCCAAGATCGTTGATCGTGTCCAAACCTTG 1808
Query 241 CTCGTTGATCCAATCCCATTAG 262
|||||||| |||||||||||||
Sbjct 1809 CTCGTTGACCCAATCCCATTAG 1830
> AT3G25830.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like
sequence-1,8-cineole | chr3:9447508-9450420 FORWARD LENGTH=1944
Length=1944
Score = 226 bits (122), Expect = 9e-59
Identities = 221/267 (83%), Gaps = 13/267 (5%)
Strand=Plus/Plus
Query 1 ATGCATGAGACCGGAGTTTCGGAGG-AAGAGGCACGCGCA-CATGTGCAGCAGATGATAA 58
|||||||||||||||| ||| |||| ||| |||||| | | || ||||| |||||||| |
Sbjct 1562 ATGCATGAGACCGGAGCTTCAGAGGAAAG-GGCACGTG-ATCACGTGCATCAGATGATTA 1619
Query 59 GTCTCAC-T-TGGGACGAGATGAACTATGAAGCACGAACGGCGGCACGCAGTTCTTCCTT 116
| | || | |||||||| ||||||| ||| || || ||||| ||| |||||| |
Sbjct 1620 G-C-GACATGTGGGACGACATGAACTCCGAA--AC-AAAAACGGCATGCAATTCTTCGTC 1674
Query 117 ACTTTCTCGACGTTTTGTGGAAACTGCAATGAACT-TGGCACGCATGTCGCAATGCATGT 175
|| |||| || ||||| |||| |||||||||| | ||||||||||||||||||||||||
Sbjct 1675 ACGTTCTAGAGGTTTTAAGGAAGCTGCAATGAA-TCTGGCACGCATGTCGCAATGCATGT 1733
Query 176 ATCAACATGGCGATGGTCATGGCTGTCCTGACAAAGCCAAGATCGTTGATCGTGTCCAAA 235
||||| |||| ||||||||||| || ||||| |||||||||| | ||||||||||||||
Sbjct 1734 ATCAATATGGTGATGGTCATGGATGCCCTGAAAAAGCCAAGACCATTGATCGTGTCCAAT 1793
Query 236 CCTTGCTCGTTGATCCAATCCCATTAG 262
|||| |||||||||||||| |||||||
Sbjct 1794 CCTTACTCGTTGATCCAATTCCATTAG 1820
> AT3G25820.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like
sequence-1,8-cineole | chr3:9439246-9442173 FORWARD LENGTH=1959
Length=1959
Score = 226 bits (122), Expect = 9e-59
Identities = 221/267 (83%), Gaps = 13/267 (5%)
Strand=Plus/Plus
Query 1 ATGCATGAGACCGGAGTTTCGGAGG-AAGAGGCACGCGCA-CATGTGCAGCAGATGATAA 58
|||||||||||||||| ||| |||| ||| |||||| | | || ||||| |||||||| |
Sbjct 1561 ATGCATGAGACCGGAGCTTCAGAGGAAAG-GGCACGTG-ATCACGTGCATCAGATGATTA 1618
Query 59 GTCTCAC-T-TGGGACGAGATGAACTATGAAGCACGAACGGCGGCACGCAGTTCTTCCTT 116
| | || | |||||||| ||||||| ||| || || ||||| ||| |||||| |
Sbjct 1619 G-C-GACATGTGGGACGACATGAACTCCGAA--AC-AAAAACGGCATGCAATTCTTCGTC 1673
Query 117 ACTTTCTCGACGTTTTGTGGAAACTGCAATGAACT-TGGCACGCATGTCGCAATGCATGT 175
|| |||| || ||||| |||| |||||||||| | ||||||||||||||||||||||||
Sbjct 1674 ACGTTCTAGAGGTTTTAAGGAAGCTGCAATGAA-TCTGGCACGCATGTCGCAATGCATGT 1732
Query 176 ATCAACATGGCGATGGTCATGGCTGTCCTGACAAAGCCAAGATCGTTGATCGTGTCCAAA 235
||||| |||| ||||||||||| || ||||| |||||||||| | ||||||||||||||
Sbjct 1733 ATCAATATGGTGATGGTCATGGATGCCCTGAAAAAGCCAAGACCATTGATCGTGTCCAAT 1792
Query 236 CCTTGCTCGTTGATCCAATCCCATTAG 262
|||| |||||||||||||| |||||||
Sbjct 1793 CCTTACTCGTTGATCCAATTCCATTAG 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5