BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322753
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26120.1 | Symbols: TEL1 | terminal EAR1-like 1 | chr3:95463... 2577 0.0
> AT3G26120.1 | Symbols: TEL1 | terminal EAR1-like 1 | chr3:9546398-9549453
FORWARD LENGTH=2056
Length=2056
Score = 2577 bits (1395), Expect = 0.0
Identities = 1711/1856 (92%), Gaps = 52/1856 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGATTCTAGACTTTTTCCGTTCGCCGGAAACTTAGACCCTCGTGCTCAAGAGTTT 60
|||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGACTCCAGACTTTTTCCGTTCGTCGGAAACTTAGACCCTCGTGCTCAAGAGTTT 60
Query 61 ATACCACTT-AACCCTACCTCCTCCGGTTTTTACTTCCCGTTCACTCCTCCT--T-CACC 116
|||||| || ||||||| ||||||||||||| |||| |||| |||||||||| | |||
Sbjct 61 ATACCA-TTCAACCCTATCTCCTCCGGTTTTCACTTTCCGTACACTCCTCCTCCTCCACA 119
Query 117 GCTTCCTCCGCCGTTA----CATC--CGT-C-G------T----CGGAGCCAAGAGTTTT 158
||||||||| |||||| | || ||| | | | ||||||||||||||||
Sbjct 120 GCTTCCTCCTCCGTTACCTCCGTCGTCGTACGGATTATCTCCGACGGAGCCAAGAGTTTT 179
Query 159 CACATTCTTCAACATCCCACCACATCCGGTGATGTTTTCTCCTCCTCCTTCTCAACCACC 218
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 180 CACATTCTTCAATATCCCACCACATCCGATGATGTTTTCTCCTCCTCCTCCTCAACCACC 239
Query 219 ACCATCACCACCACCGCGTCCGTGTTTTAACGGCGTTTCGGCAGCTCAACGACTTCCTCC 278
| | |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 240 A-C--CACCACCACCGCGTCCATGTTTCAACGGCGTTTCGGCAGCTCAACGGCTTCCTCT 296
Query 279 GCCGTCAAATTCTCCGACGCGATCTCTCTCATTGATCTCCGTACCGCGTGACGTCACCGA 338
|||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 297 GCCGTCAAATACTCCGACGCGATCTCTCTCTTTGATCTCCGTACCACGTGACGTAACCGA 356
Query 339 GTCTACAGTGAGACGTGACTTGGAGGTTTACGGCGACGTTCGTGGCGTGCAAATGGAGAG 398
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTCTACGGTGAGACGTGACTTGGAGGTTTACGGCGACGTTCGTGGCGTGCAAATGGAGAG 416
Query 399 AATCTCTGAAGGAATCGTGACCGTCCATTTCTACGATATCCGTGACGCTAAAAGAGCGGT 458
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 417 AATCTCTGAAGGAATCGTGACCGTCCATTTCTACGATATACGTGACGCTAAAAGAGCGGT 476
Query 459 TCGAGAAGTTTGTGGTAGACACATGCAGCAACAAGCCAGAGGTGGAAGCGTTTGGAGCTC 518
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 477 ACGTGAAGTTTGTGGTAGACACATGCAGCAACAAGCTAGAGGTGGAAGCGTCTGGAGCTC 536
Query 519 ACCTTCTACTTCATCGGCGCGTGGGTTTGTTTCCGGTAGACCTGTGTGGGCTCAGTTCGT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACCTTCTACTTCATCGGCGCGTGGGTTTGTTTCCGGTAGACCTGTGTGGGCTCAGTTCGT 596
Query 579 AGTTCCGGCCACTAGCGCCGTTCCCGGAGGTTGTAACCAGGGAACGTTAGTTATATTTAA 638
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 597 AGTTCCGGCGACTAGTGCCGTTCCCGGAGGTTGTAACCAAGGAACGTTAGTAATATTTAA 656
Query 639 CTTAGACCCTGAAGTCTCTTCCATTACTCTCAGACAGTTTTTCCAAGTTTACGGTCCGAT 698
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 657 CTTAGACCCTGAGGTCTCTTCCATTACTCTCAGACAGATTTTCCAAGTTTACGGTCCGAT 716
Query 699 CAAAGAGTTGAGAGAGACACCGTACAAGAAACATCAAAGGTTCATTGAGTTTTATGATGT 758
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 717 CAAAGAGTTGAGAGAGACACCGTACAAAAAACATCAAAGGTTCGTTGAGTTTTATGATGT 776
Query 759 AAGAGATGCGGCGAGAGCGTTTGATCGAATGAATGGTGAAGAGATCGGTGGGAAGCAAGT 818
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 777 GAGAGACGCGGCGAGAGCGTTTGATCGAATGAATGGTAAAGAGATTGGTGGGAAGCAAGT 836
Query 819 TGTGATCGAATTTAGTCGACCTGGTGGAATTAAGAACAAGTTCAGGTCATCTAGGCAACC 878
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 TGTGATCGAATTTAGTCGACCTGGTGGAATTAAGAACAGGTTCAGGTCATCTAGGCAACC 896
Query 879 GCAGCTACCGTTTCAACCGCTTCAACAGCCACCAATTCTATTTCCTCCTTTGAGGCGGCC 938
||||||||| ||||||||||||| | |||||||||| ||| |||||||||||||||||||
Sbjct 897 GCAGCTACCATTTCAACCGCTTCGAGAGCCACCAATCCTAATTCCTCCTTTGAGGCGGCC 956
Query 939 AGTAACTCTCATGAAAGATAAAAACAAGAATGTGAGCCCTAAAAATGGAATTATTGCTGT 998
|||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 957 AGTATCTTTCATCAAAGATAAAAACAAGAATGTGAGCCCTAAAAATGGAGTTATTGCTGT 1016
Query 999 TGGTGCTTCTATGCGTTCGTTATGTATCATTGGTGATGACGATAATAAGAC-C------C 1051
|| ||||||||||||||| ||||||||||| | || ||||||||||||||| | |
Sbjct 1017 TGATGCTTCTATGCGTTCCTTATGTATCATCGATGCTGACGATAATAAGACTCGAGGAAC 1076
Query 1052 --GAGGAACGGAATCCGAATGTGCGGAGACAAAGAGCAAGAATGTGGCTAAGTGGGGGAA 1109
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 CCGAGGAACGGAATCCGAATGCGCGGAGACAAAAAGCAAGAATGTGGCTAAGTGGGGGAA 1136
Query 1110 GAAAAGACAGATGAAGAACATGGAACTAAGTCAGTTTCTTATCAGTGAAGAAACCATGGA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GAAAAGACAGATGAAGAACATGGAACTAAGTCAGTTTCTTATCAGTGAAGAAACCATGGA 1196
Query 1170 AGATCCGAGTTGCAGAGATCCACGTACTACTTTGATGATCAAGAACATACCAAACAAGTA 1229
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 AGATCCGAGTTGCAGAGATCCACGTACCACTTTGATGATCAAGAACATACCAAACAAGTA 1256
Query 1230 CAGTCAAAAGCTACTCTTGGATATGCTAGACAATCATTGCATTCACATCAACAAAGCAAT 1289
||||||||||||||| ||||||||| | ||||| |||||||||||||| ||| |||||||
Sbjct 1257 CAGTCAAAAGCTACTGTTGGATATGTTGGACAAGCATTGCATTCACATAAACGAAGCAAT 1316
Query 1290 CACCGAGGAGCACGATGAACATGAGTCTCATCATCAGCCGTATTCTTCTTATGATTTCGT 1349
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CACCGAGGAGCACAATAAACATGAGTCTCATCATCAGCCGTATTCTTCTTATGATTTCGT 1376
Query 1350 GTATCTCCCCATGGATTTCAACAATAAGTGCAATGTTGGTTATGGGTTTGTGAACATGAC 1409
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1377 GTATCTCCCCATGGATTTCAACAACAAGTGCAATGTTGGTTATGGGTTTGTGAACATGAC 1436
Query 1410 ATCTCCGGAAGCAGCTTGGAGGTTTTACAAGGCGTTTCATCATCAACGTTGGGAGGTTTT 1469
||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 1437 ATCTCCGGAAGCAGCTTGGAGGTTTTACAAGGCATTTCATGGTCAGCGTTGGGAGGTTTT 1496
Query 1470 TAATTCGCGTAAGATTTGCCAGATCACATATGCAAGAGTTCAGGGTTTGGAGGATCTAAA 1529
|||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1497 TAATTCGCATAAGATTTGCCAAATCACATATGCGAGAGTTCAGGGTTTGGAGGATCTAAA 1556
Query 1530 GGAACACTTCAAGAGCTCTAAGTTTCCGTACGAGGCTGAGCTATACCTGCCAGTGGTCTT 1589
|||||||||||||||||| || ||||| | ||||||||||||||||||||| ||||||||
Sbjct 1557 GGAACACTTCAAGAGCTCGAAATTTCCATGCGAGGCTGAGCTATACCTGCCGGTGGTCTT 1616
Query 1590 CTCGCCTCCACGAGACGGGAAG-AGGTTAACAGAACCTGTCTCCATCAACAT--C-A--A 1643
||||||||||||||| |||||| || |||||||||||||||||||||||||| | | |
Sbjct 1617 CTCGCCTCCACGAGATGGGAAGCAG-TTAACAGAACCTGTCTCCATCAACATAACCATCA 1675
Query 1644 -CGGCTGCACCAGACTTAATCAT---C-TT--GAGCGAATGGACGGTCAAGATCACTCTC 1696
|||||||||||||||||||||| | || |||| || | |||||||||||||| ||
Sbjct 1676 ACGGCTGCACCAGACTTAATCATAATCATTTTGAGCAAACAGTCGGTCAAGATCACTTTC 1735
Query 1697 TGAGTAGATCATATTGTGATAGTGACCATGATAATAGTCACGAAGATGGATTTTCCGGCA 1756
||||| |||||| |||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1736 TGAGTGGATCATGTTGTGACAGTGACCATGATAACAGTCATGAAGATGGATTTTCCGGCA 1795
Query 1757 GTAGTAGCATAGACTGTGGCCGGTGTATCACATTGGAAGGAGAAACATCTTTCTAG 1812
|||| | |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1796 GTAGC-G--TAGACTGTGGCCGGAGTATCACCGTGGAAGGAGAAACATCTTTCTAG 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89658173370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5