BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322756
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26140.1 | Symbols: | Cellulase (glycosyl hydrolase family ... 2390 0.0
> AT3G26140.1 | Symbols: | Cellulase (glycosyl hydrolase family
5) protein | chr3:9559682-9563070 REVERSE LENGTH=1587
Length=1587
Score = 2390 bits (1294), Expect = 0.0
Identities = 1453/1531 (95%), Gaps = 5/1531 (0%)
Strand=Plus/Plus
Query 1 ATGGCATATCCTCTCTCTACAAACTCTCGTTGGATCATCGACGAAAAAGGACAAAGAGTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCATATCCTCTCTCTACAAACTCTCGTTGGATCATCGACGAAAAAGGGCAAAGAGTG 60
Query 61 AAGCTGGCGTGTGTGAATTGGCCATCGCATTTGCAGCCTGTGGTGGCGGAAGGGCTGAGC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AAGCTGGCGTGTGTGAATTGGCCATCACATTTGCAGCCTGTGGTGGCGGAAGGGCTGAGC 120
Query 121 AAGCAGGGAGTAGATGACTTGGCCAAGAAGATAGTGGCAATGGGTTTCAACTGTGTAAGG 180
|||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 121 AAGCAGAGTGTAGATGACTTGGCCAAGAAGATAATGGCAATGGGTTTCAACTGTGTTAGG 180
Query 181 TTAACTTGGCCACTTGATCTAGCTACAAATGAGACGTTGGCTAATAATGTTACTGTGAGA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTACTTGGCCACTTGATCTAGCTACAAATGAGACGTTGGCTAATAATGTTACTGTGAGA 240
Query 241 CAATCTTTTCAAAGTCTTGGTCTTAATGATGACATTTCTGGTTTCGAAACAAAGAACCCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAATCTTTTCAAAGTCTTGGTCTTAATGATGACATTTCTGGTTTCGAAACAAAGAACCCA 300
Query 301 TCCATGATTGATCTTCCGCTCATTGAAGCTTACAAGAAGGTAGTAGCTAAGTTGGGAAAC 360
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TCCATGATTGATCTTCCCCTCATTGAAGCTTACAAGAAGGTGGTAGCTAAGTTGGGAAAC 360
Query 361 AAAAATGTGATGGTGATATTAGACAACCACGTGACCAAGCCAGGATGGTGCTGTGGCTAC 420
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 361 AATAATGTGATGGTGATATTAGACAACCACGTGACCAAGCCAGGGTGGTGTTGTGGCTAC 420
Query 421 AACGACGGAAACGGTTTCTTTGGCGACACTTTCTTTGACCCTGCCACGTGGATCTCCGGT 480
|||||||| |||||||||||||| |||||||||||||||||| | ||||||||| |||||
Sbjct 421 AACGACGGCAACGGTTTCTTTGGTGACACTTTCTTTGACCCTACTACGTGGATCGCCGGT 480
Query 481 CTGATCAAGATAGCCACGACTTTTAAAGGTGCCTCCAATGTCGTTGGCATGAGCCTCAGA 540
|||| ||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 481 CTGACCAAGATAGCCATGACTTTCAAAGGTGCCACTAATGTCGTTGGCATGAGCCTCAGA 540
Query 541 AATGAACTTAGAGGACCAAAACAAAACGTCGACGATTGGTTCAAGTACATGCAACAAGGG 600
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AACGAACTTAGAGGACCAAAACAAAACGTCGATGATTGGTTCAAGTACATGCAACAAGGG 600
Query 601 GCCGAGGCACTTCACGAAGCAAACCCTAATGTACTTGTAATCCTGTCTGGCCTCAGCTAC 660
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GCCGAAGCAGTTCACGAAGCAAACCCTAATGTACTTGTAATCCTTTCTGGCCTCAGCTAC 660
Query 661 GATACCGACCTCTCATTTGTCCGATCACGAC-CTGTAAACCTAACTTTCACTAGAAAACT 719
|| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 661 GACACCGACCTCTCATTTGTCCGATCACGACAC-GTAAACCTAACTTTCACTAGAAAACT 719
Query 720 CGTGTTCGAGCTCCATCGATACTCTTTCACCAACACAAAAACATGGAGTTCCAAAAACCC 779
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 CGTGTTTGAGCTCCATCGGTACTCTTTCACCAACACAAACACATGGAGTTCCAAAAACCC 779
Query 780 TAACGAGGCATGCGGCGAGATTCTGCAAAGCATAGAGAACGGGGGCGGTTTCAACCTCCG 839
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 780 TAACGAGGCATGCGGTGAGATTCTGAAAAGCATCGAGAACGGGGGCGGTTTCAATCTCCG 839
Query 840 TGACTTCCCGGTGTTTCTTAGTGAGTTTGGAATTGACTTGAGAGGCAAAAATGTTAACGA 899
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 840 TGACTTCCCGGTGTTTCTTAGCGAGTTTGGAATCGACTTGAGAGGCAAAAATGTTAACGA 899
Query 900 TAATCGGTATATCGGATGTATATTAGGTTGGGCAGCGGAAAATGACGTAGATTGGTCGAT 959
|||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 TAATCGCTACATTGGATGTATATTAGGTTGGGCCGCGGAAAATGACGTAGATTGGTCGAT 959
Query 960 TTGGGCACTTCAAGGAAGTTATTATCTCAGAGAAGGTGTGGTCGGAATGAGCGAGTATTA 1019
|||| | |||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 960 TTGGACTCTTCAAGGAAGTTACTATCTCAGAGAAGGTGTGGTCGGAATGAGTGAGTTTTA 1019
Query 1020 CGGTATCTTAGATTCGGATTGGGTTCGTGTTCGAAGCCAAAATTTCTTGCAAAGATTGTC 1079
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 CGGTATCTTGGATTCGGATTGGGTTCGTGTTCGAAGCCAAAGTTTCTTGCAAAGATTGTC 1079
Query 1080 TCTGATTCAATCCCCGCTTCAAGGACCGGGCTCTCAATCCAAAGTCTACAATCTTGTTTT 1139
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 TCTGATTCTATCCCCGCTTCAAGGACCAGGCTCTCAATCCAAAGTCTACAATCTTGTTTT 1139
Query 1140 CCACCCGTTAACCGGACTTTGCATGCTACAAAGTATCTTAGATCCAACCAAGGTCACTCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCACCCGTTAACCGGACTTTGCATGCTACAAAGTATCTTAGATCCAACCAAGGTCACTCT 1199
Query 1200 CGGTCTATGTAATGAATCTCAACCATGGAGCTACACTCCTGAGAACACCCTGCTGACACT 1259
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1200 CGGTCTATGTAATGAATCTCAACCATGGAGCTACACTCCTCAGAACACCCTG---ACACT 1256
Query 1260 CAAAGACAAGTCTCTATGCTTAGAAACCACTGGGCCCAACGCGCCGGTTAAGCTCAGTGA 1319
|||||||||||| ||||||||||| | ||| ||||| || ||||||||||||||||||||
Sbjct 1257 CAAAGACAAGTCCCTATGCTTAGAGAGCACCGGGCCGAATGCGCCGGTTAAGCTCAGTGA 1316
Query 1320 AGCGAGTTGCTCAAGCCCTAATTTGTCAAAATGGGAGACTATTTCAGCCTCTAATATGCT 1379
| |||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 1317 AACGAGTTGCTCGAGCCCTAATTTGTCAGAATGGGAGACCATCTCAGCCTCTAATATGCT 1376
Query 1380 CTTAGCAGCGAAATCAACTAATAACTCGCTTTGTCTTGACGTGGATGAATCCAATAACCT 1439
|||||| || |||||||| |||||||| ||||| ||||||||||||||| | ||||||||
Sbjct 1377 CTTAGCTGCTAAATCAACCAATAACTCACTTTGCCTTGACGTGGATGAAACAAATAACCT 1436
Query 1440 CATCGCTAGTAACTGCAAGTGTGTGAAGGGCGAAGACAGCTCGTGTGATCCGATAAGTCA 1499
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1437 CATGGCTAGTAACTGCAAGTGTGTGAAGGGCGAAGACAGCTCGTGTGATCCGATAAGCCA 1496
Query 1500 GTGGTTTAAGATTGTTAAAGTTCGTAAATAA 1530
|||||| ||||||||||||||| ||||||||
Sbjct 1497 GTGGTTCAAGATTGTTAAAGTTAGTAAATAA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5