BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322778
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26430.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1653 0.0
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motif... 1033 0.0
> AT3G26430.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:9671517-9675927 FORWARD LENGTH=3162
Length=3162
Score = 1653 bits (895), Expect = 0.0
Identities = 1065/1147 (93%), Gaps = 11/1147 (1%)
Strand=Plus/Plus
Query 1 ATGGAAACTAATCACTTGTTGATAAAGT-TAGTCTTATTAGCATCATGTCTCATACATCA 59
||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1982 ATGGAAACTAATCTCTTGTTGGTAAAGTGT-GTCTTATTAGCATCATGTCTCATACATCC 2040
Query 60 ACGTGTTTGCTCT-C--CTTGCAATTTTCCGGCGTTCTTCAACTTCGGCGACTCTAACTC 116
|||| ||||||| | |||||||||| |||||| | |||||||||||||||||||||||
Sbjct 2041 CCGTGCTTGCTCTCCTTCTTGCAATTTCCCGGCGATATTCAACTTCGGCGACTCTAACTC 2100
Query 117 CGACACAGGTGGCCTCTCCG-CTGCCTTCGGACAAGCCCCTTACCCTAATGGCCGAACTT 175
||||||||||||||| || | || | |||||||||||||||||||| ||||||| ||| |
Sbjct 2101 CGACACAGGTGGCCTTTCTGCCT-CTTTCGGACAAGCCCCTTACCCAAATGGCCAAACCT 2159
Query 176 TCTTCCACTCCCCTTCCGGTCGTTTCGCAGATGGTCGACTCATCATTGACTTCATAGCGG 235
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2160 TCTTCCACTCCCCTTCCGGTCGTTTCTCAGATGGTCGACTCATCATTGACTTCATAGCGG 2219
Query 236 AGGAGTTAGGGTTACCATACCTAAATGCTTTCTTGGACTCCATCGGTTCAAACTTCAGCC 295
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2220 AGGAGTTAGGTTTACCATACCTAAATGCTTTCTTAGACTCCATCGGTTCAAACTTCAGCC 2279
Query 296 ATGGTGCCAATTTCGCCACCGCTGGTTCCACCATCCGGCCACCAAACAGCA-CCATTTCT 354
||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||| ||
Sbjct 2280 ATGGTGCCAATTTCGCCACCGCTGGCTCCACCGTCCGGCCACCAAAC-GCAACCATCGCT 2338
Query 355 CAGAGCGGTGCAAGTCCAATCTCTCTCGACGTTCAATTGGTTCAACTCTCCGATTTCCTC 414
|||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 2339 CAGAGCGGTGTGAGTCCAATCTCTCTCGACGTTCAATTGGTCCAATTCTCCGATTTCATC 2398
Query 415 ACACGATCACAACTCATTCGCAATCGAGGTGGAGTGTTTAAGAAATTACTTCCGAAGAAA 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2399 ACACGATCACAACTCATTCGCAATCGAGGTGGAGTGTTTAAGAAATTGCTTCCCAAGAAA 2458
Query 475 GCGTATTTCTCTCAAGCATTGTACACATTCGACATCGGTCAGAATGATCTTACCTCTGGA 534
| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 2459 GAGTATTTCTCTCAAGCATTGTACACATTCGACATCGGTCAGAACGATCTCACCGCTGGA 2518
Query 535 TTAAAACTCAACATGACTACAGATCAAATCAAGGCTTATATACCAGATGTTCTTGATCAA 594
||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 2519 CTAAAACTTAACATGACTTCAGATCAAATCAAGGCTTATATACCAGATGTTCATGATCAG 2578
Query 595 TTCTCTAACGCCATTCGTAAGGTGTATAGTAAAGGAGGAAGAAGATTCTGGATACACAAC 654
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2579 CTCTCTAACGTCATTCGTAAGGTGTATAGTAAAGGAGGAAGAAGATTTTGGATACACAAC 2638
Query 655 ACAGCTCCACTTGGTTGTTTACCTTATGTTTTAGACCGTTTTCCAGTACCGGCTTCTCAA 714
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 2639 ACAGCTCCACTTGGTTGTTTACCTTATGTTTTAGACCGGTTCCCAGTACCGGCTTCTCAA 2698
Query 715 ATCGACAATCACGGTTGTGCAATTTCGCGTAATGAGATTGCTCGGTATTATAACTCTGAA 774
|||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 2699 ATCGACAATCACGGTTGTGCAATTCCGCGTAATGAGATTGCTCGATACTATAACTCTGAA 2758
Query 775 CTAAAAAGAAGAGTAATTGGGTTAAGAAAAGAGCTCTCTGAAGCTGCACTTACTTATGTT 834
|| ||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 2759 CTTAAAAGAAGAGTGATTGAGTTGAGAAAAGAGCTCTCTGAAGCTGCGTTTACTTATGTT 2818
Query 835 GATATCTACTCTGTCAAGCTTACTCTAATCACTCATCCCAAGAACCTAGGTTTTAGATAT 894
|||||||||||| ||||||||||||| |||||||| ||||||| || |||||||| |||
Sbjct 2819 GATATCTACTCTATCAAGCTTACTCTCATCACTCAAGCCAAGAAACTCGGTTTTAGGTAT 2878
Query 895 CCTTTGGTGGCTTGTTGTGGACATGGTGGGAAGTACAATTACAACAAGCTAATCAAATGT 954
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 2879 CCTTTGGTGGCTTGTTGTGGACATGGTGGGAAGTACAATTTCAACAAGCTTATTAAATGT 2938
Query 955 GGAGCTAAAGTTATGGTGCAA-GGGAAAGAGATTGTCCTTGCTAAGTCTTGTAACGACGT 1013
||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 2939 GGAGCTAAAGTTATGAT-CAAAGGGAAAGAGATTGTGCTTGCTAAGTCTTGTAACGATGT 2997
Query 1014 GTCGTTTAGAGTTAGCTGGGACGGTATACATTTCACTGAAACGGCAAACAGTTGGATCTT 1073
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2998 GTCGTTTAGAGTTAGCTGGGACGGTATACATTTCACTGAAACGACAAACAGTTGGATCTT 3057
Query 1074 TCAGCAAATAAACGGCGGGGCGTTTTCGGATCCTCCTATTCCCCTTAAGTTTGCCTGCAC 1133
|||||||||||||| |||||||||||||||||||||| |||| | |||| |||||||||
Sbjct 3058 TCAGCAAATAAACGACGGGGCGTTTTCGGATCCTCCTCTTCCTGTGAAGTCTGCCTGCAC 3117
Query 1134 CAGATAG 1140
|||||||
Sbjct 3118 CAGATAG 3124
> AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671517-9676005 FORWARD LENGTH=3033
Length=3033
Score = 1033 bits (559), Expect = 0.0
Identities = 654/701 (93%), Gaps = 2/701 (0%)
Strand=Plus/Plus
Query 441 AGGTGGAGTGTTTAAGAAATTACTTCCGAAGAAAGCGTATTTCTCTCAAGCATTGTACAC 500
||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 2218 AGGTGGAGTGTTTAAGAAATTGCTTCCCAAGAAAGAGTATTTCTCTCAAGCATTGTACAC 2277
Query 501 ATTCGACATCGGTCAGAATGATCTTACCTCTGGATTAAAACTCAACATGACTACAGATCA 560
|||||||||||||||||| ||||| ||| ||||| ||||||| ||||||||| |||||||
Sbjct 2278 ATTCGACATCGGTCAGAACGATCTCACCGCTGGACTAAAACTTAACATGACTTCAGATCA 2337
Query 561 AATCAAGGCTTATATACCAGATGTTCTTGATCAATTCTCTAACGCCATTCGTAAGGTGTA 620
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct 2338 AATCAAGGCTTATATACCAGATGTTCATGATCAGCTCTCTAACGTCATTCGTAAGGTGTA 2397
Query 621 TAGTAAAGGAGGAAGAAGATTCTGGATACACAACACAGCTCCACTTGGTTGTTTACCTTA 680
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2398 TAGTAAAGGAGGAAGAAGATTTTGGATACACAACACAGCTCCACTTGGTTGTTTACCTTA 2457
Query 681 TGTTTTAGACCGTTTTCCAGTACCGGCTTCTCAAATCGACAATCACGGTTGTGCAATTTC 740
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2458 TGTTTTAGACCGGTTCCCAGTACCGGCTTCTCAAATCGACAATCACGGTTGTGCAATTCC 2517
Query 741 GCGTAATGAGATTGCTCGGTATTATAACTCTGAACTAAAAAGAAGAGTAATTGGGTTAAG 800
|||||||||||||||||| || |||||||||||||| ||||||||||| |||| ||| ||
Sbjct 2518 GCGTAATGAGATTGCTCGATACTATAACTCTGAACTTAAAAGAAGAGTGATTGAGTTGAG 2577
Query 801 AAAAGAGCTCTCTGAAGCTGCACTTACTTATGTTGATATCTACTCTGTCAAGCTTACTCT 860
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2578 AAAAGAGCTCTCTGAAGCTGCGTTTACTTATGTTGATATCTACTCTATCAAGCTTACTCT 2637
Query 861 AATCACTCATCCCAAGAACCTAGGTTTTAGATATCCTTTGGTGGCTTGTTGTGGACATGG 920
|||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 2638 CATCACTCAAGCCAAGAAACTCGGTTTTAGGTATCCTTTGGTGGCTTGTTGTGGACATGG 2697
Query 921 TGGGAAGTACAATTACAACAAGCTAATCAAATGTGGAGCTAAAGTTATGGTGCAA-GGGA 979
|||||||||||||| ||||||||| || ||||||||||||||||||||| | ||| ||||
Sbjct 2698 TGGGAAGTACAATTTCAACAAGCTTATTAAATGTGGAGCTAAAGTTATGAT-CAAAGGGA 2756
Query 980 AAGAGATTGTCCTTGCTAAGTCTTGTAACGACGTGTCGTTTAGAGTTAGCTGGGACGGTA 1039
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2757 AAGAGATTGTGCTTGCTAAGTCTTGTAACGATGTGTCGTTTAGAGTTAGCTGGGACGGTA 2816
Query 1040 TACATTTCACTGAAACGGCAAACAGTTGGATCTTTCAGCAAATAAACGGCGGGGCGTTTT 1099
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 2817 TACATTTCACTGAAACGACAAACAGTTGGATCTTTCAGCAAATAAACGACGGGGCGTTTT 2876
Query 1100 CGGATCCTCCTATTCCCCTTAAGTTTGCCTGCACCAGATAG 1140
||||||||||| |||| | |||| ||||||||||||||||
Sbjct 2877 CGGATCCTCCTCTTCCTGTGAAGTCTGCCTGCACCAGATAG 2917
Score = 309 bits (167), Expect = 4e-83
Identities = 215/237 (91%), Gaps = 7/237 (3%)
Strand=Plus/Plus
Query 1 ATGGAAACTAATCACTTGTTGATAAAGT-TAGTCTTATTAGCATCATGTCTCATACATCA 59
||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1985 ATGGAAACTAATCTCTTGTTGGTAAAGTGT-GTCTTATTAGCATCATGTCTCATACATCC 2043
Query 60 ACGTGTTTGCTCT-C--CTTGCAATTTTCCGGCGTTCTTCAACTTCGGCGACTCTAACTC 116
|||| ||||||| | |||||||||| |||||| | |||||||||||||||||||||||
Sbjct 2044 CCGTGCTTGCTCTCCTTCTTGCAATTTCCCGGCGATATTCAACTTCGGCGACTCTAACTC 2103
Query 117 CGACACAGGTGGCCTCTCCGC-TGCCTTCGGACAAGCCCCTTACCCTAATGGCCGAACTT 175
||||||||||||||| || || | | |||||||||||||||||||| ||||||| ||| |
Sbjct 2104 CGACACAGGTGGCCTTTCTGCCT-CTTTCGGACAAGCCCCTTACCCAAATGGCCAAACCT 2162
Query 176 TCTTCCACTCCCCTTCCGGTCGTTTCGCAGATGGTCGACTCATCATTGACTTCATAG 232
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2163 TCTTCCACTCCCCTTCCGGTCGTTTCTCAGATGGTCGACTCATCATTGACTTCATAG 2219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5