BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322830
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 710 0.0
AT5G40970.1 | Symbols: | Protein of unknown function (DUF 3339... 183 9e-46
> AT3G27030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3339 (InterPro:IPR021775);
BEST Arabidopsis thaliana protein match is: Protein of unknown
function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast
hits to 271 proteins in 16 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:9972508-9974225
REVERSE LENGTH=429
Length=429
Score = 710 bits (384), Expect = 0.0
Identities = 414/429 (97%), Gaps = 0/429 (0%)
Strand=Plus/Plus
Query 1 ATGCCTGATTGGGGACCAGTTTTTGTCGCGGTGACGCTTTTCGTGTTGCTAACTCCGGGA 60
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1 ATGCCTGATTGGGGACCGGTTTTTGTCGCGGTGACGCTTTTTGTGTTGCTGACTCCGGGA 60
Query 61 CTGCTGATTCAAGTTCCCGGGAGAGGTCGAGTGGTTGAGTTTGGAACGTTTCAGACAAGT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGCTGATTCAAGTTCCTGGGAGAGGTCGAGTGGTTGAGTTTGGAACGTTTCAGACAAGT 120
Query 121 GGTCTCTCAGTTATTGTTCATACTCTCATTTACTTCACTCTTGTTTGTATTCTCTTGCTT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GGTCTCTCGGTTATTGTTCATACTCTTATTTACTTCACTCTTGTTTGTATTCTCTTGCTT 180
Query 181 GCTCTCCAAATTCACATTTGTAACCTTTTTTCTACTTCAATGGCGGATTGGGCTCCAGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCTCCAAATTCACATTTGTAACCTTTTTTCTACTTCAATGGCGGATTGGGCTCCAGTT 240
Query 241 CTCGTCGGTGTGGTCCTCTTCGTGATTCTCTCACCGGGACTTCTCTTCTCATTACCTGGT 300
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCGTCGGCGTGGTCCTGTTCGTGATTCTCTCACCGGGACTTCTCTTCTCATTACCTGGT 300
Query 301 AACAACCGGACTGTAGATTTCGGTGGTCTCAAAACCAACGGCAAAGCCATCGCTGTTCAC 360
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AACAACCGCACCGTAGATTTCGGTGGCCTCAAAACCAACGGCAAAGCCATCGCTGTTCAC 360
Query 361 ACTCTCATCTTCTTCGCTATTTACACCATTTTGATCCTCGCTCTTAATCTCCACATCTAC 420
||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||
Sbjct 361 ACTCTCATCTTCTTCGCCATTTACACCATTTTAATCCTCGCCCTCAATCTCCACATCTAC 420
Query 421 ACTGGCTGA 429
|||||||||
Sbjct 421 ACTGGCTGA 429
> AT5G40970.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:16414038-16414504 FORWARD LENGTH=467
Length=467
Score = 183 bits (99), Expect = 9e-46
Identities = 177/214 (83%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 218 CAATGGCGGATTGGGCTCCAGTTCTCGTCGGTGTGGTCCTCTTCGTGATTCTCTCACCGG 277
||||||||||||||||||||||||||||||| || || | ||||| || || || ||||
Sbjct 42 CAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTATTATTCGTTATCCTTTCTCCGG 101
Query 278 GACTTCTCTTCTCATTACCTGGTA-A-CAACCGGACTGTAGATTTCGGTGGTC-TCAAAA 334
||||||| ||||| || || || | | || || ||| | | ||||| || | | ||||
Sbjct 102 GACTTCTTTTCTCGTTGCCCGG-ACATCA-CCATACTCTCCAATTCGGCGG-CATGAAAA 158
Query 335 CCAACGGCAAAGCCATCGCTGTTCACACTCTCATCTTCTTCGCTATTTACACCATTTTGA 394
||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||
Sbjct 159 CCAACGGCAAAGCCATCGCCGTTCACACACTCATCTTCTTCGCTGCTTACACCATCTTGA 218
Query 395 TCCTCGCTCTTAATCTCCACATCTAC-ACTGGCT 427
|||||||| | |||||||||||| || || ||||
Sbjct 219 TCCTCGCTGTCAATCTCCACATC-ACTACCGGCT 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20358438345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5