BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322831
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27040.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 1269 0.0
AT2G01790.1 | Symbols: | TRAF-like family protein | chr2:34132... 889 0.0
AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:19839... 128 1e-28
AT3G58400.1 | Symbols: | TRAF-like family protein | chr3:21602... 76.8 4e-13
AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328... 54.7 2e-06
> AT3G27040.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:9974912-9977927 REVERSE LENGTH=1077
Length=1077
Score = 1269 bits (687), Expect = 0.0
Identities = 968/1100 (88%), Gaps = 34/1100 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCGCTTGGGTGATTAAGAATTTCAACTCTTTG 60
Query 61 GATTCCGA-TAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGCCATCTAGT 119
||| || | |||||||||||||||||||||| ||||||| |||||||| || | ||||||
Sbjct 61 GATACC-ACTAGAGTTTACTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTAGT 119
Query 120 CGCTTATCCCAAGAGATTTGATGAATGTAGTTATAGTAAATGTTACTCTTTGTATCTATG 179
|||||||||||||||| | || | ||| |||| || | || |||| ||| ||||||
Sbjct 120 CGCTTATCCCAAGAGA--CG-TG-A--TAGGTATACTACTTCTTTCTCTCTGTTTCTATG 173
Query 180 TGTTTCTGATTCTAAATCTTTGCATTCCGGATGGAGAAGACACGCTAAA-TT-TT-CCT- 235
|||| ||||||| ||||||||| ||||||||||||||||| ||||||| || || |
Sbjct 174 TGTTCCTGATTCGGAATCTTTGCCTTCCGGATGGAGAAGACGCGCTAAACTTATTGGTTA 233
Query 236 TGACTATGGAGTCA-TCATCATCAAGATCAATGGGGAATCATCAAGCTGATAAGAAGTTC 294
| || | ||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 234 TAAC-AAAAAGT-ATTCATCATCAAGAACAATGGGGAATCATCAAGCTGATAAGAAGTTC 291
Query 295 ACTTGGGTGATTAAGAATTTCAACTCTTTGGATTCCGATAGAGTTTACTCTGATACATTC 354
||||||||||| ||||||| ||||||||||| ||||| ||| ||||| ||||||||||||
Sbjct 292 ACTTGGGTGATCAAGAATTACAACTCTTTGGGTTCCGGTAGTGTTTATTCTGATACATTC 351
Query 355 CAGGCCGGGCGTTGCAAATGGGGTCTACTCGCCTATCCCAAGGGATATAATAATATTAAT 414
||||||| |||||||| ||| |||||||||||| ||||||||| || | |||
Sbjct 352 AAGGCCGGTCGTTGCAAGTGGCGTCTACTCGCCTTTCCCAAGGG-------AA-A-CAAT 402
Query 415 ATCTATGATTACTTCTCTCTTTATATATATGTTCCTAATTCTAAGTCTTTGCCTTCCGGA 474
||||||||||| |||| ||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct 403 ATCTATGATTATTTCTTTCTGTATATATGTGTTCCTAATTCTGAGTCTTTGCCTTCCGGA 462
Query 475 TGGAGAAGACACGCTAAATTTTCTTTTACTATGGTAACTCAAATTCCGGGAGAACTCTCC 534
|||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 463 TGGAGAAGACGCGCTAAAGTTTCTTTTACTATGGTAAATCAAATTCCGGGAGGACTCTCC 522
Query 535 CTACAGCGAGAAGCAGAATATTGGTTTGATCAAAAGAACACAA-CCAGGGGTTTTCAATC 593
| |||||||||||||| ||| ||||||||| ||||| |||||| ||| |||||| ||||
Sbjct 523 CAACAGCGAGAAGCAGTATACTGGTTTGATGAAAAGGACACAACCCA-TGGTTTTGAATC 581
Query 594 TATGTTTCTCCTTTCGGAGATTCAAAGCAGTCATAAAGGGTTTCTTGTAAACGGAGAAGT 653
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 582 TATGTTTCTCCTTTCGGAGATTCAAAGCAGTGATAAAGGGTTTCTCGTAAACGGAGAAGT 641
Query 654 CAAGATTGTTGCAGAAGTAGATGTGCTTGAAGTTATTGGT-ATAGTCGATGTACCCGAGA 712
|||||||||||||||||||||||| ||||||||||||||| | | | |||||||| |||
Sbjct 642 CAAGATTGTTGCAGAAGTAGATGTTCTTGAAGTTATTGGTGA-ATTAGATGTACCAGAGG 700
Query 713 AACCAGAAAGCTTTGATATCAATGGGTTTCAAGTCCCTGCTTCACAAGTAGATTCTGTGA 772
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 701 AACCAGAAAGAATTGATATCAATGGGTTTCAAGTCCCTGCTTCACAGGTAGAATCTATGA 760
Query 773 ACAGTCTGTTTAAAAAGTACCCAGGCTTTGCATCAAAAGTCTGTCCCAAGAACCCACATT 832
||||||||||| ||||||| | |||||||||||||||| ||| ||||||||||| ||||
Sbjct 761 ACAGTCTGTTTGAAAAGTATCGAGGCTTTGCATCAAAAATCTTTCCCAAGAACCAACATC 820
Query 833 TGAAG-AAAACA-TACTTGAATGTTGTACTAAGTCTGAATGAGATTATGTGCAAGTCCCC 890
|| || |||||| | | || |||||||||||||| ||| ||||||| ||||||||| ||
Sbjct 821 TG-AGAAAAACATTTC-TGGATGTTGTACTAAGTATGACTGAGATTCTGTGCAAGTTTCC 878
Query 891 TGATA-AACTCTCTAATGGTGATCTTGCTGATGCATATTCTGCACTACGATATGTGACAA 949
|| | |||| || | ||||||||| || || ||||||||||||||||||| ||| ||||
Sbjct 879 GGA-AGAACTTTCCAGTGGTGATCTGGCAGAGGCATATTCTGCACTACGATTTGTTACAA 937
Query 950 AAGCAGGGTTTAAGTTGGATTGGTTGGAGATGAAACTGAAAGAGACTGGTAAGACTAGGC 1009
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 938 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTGAAAGAGACTGGTAAGAGTCGAC 997
Query 1010 TGCAAGAAATTGAGGAAGATTTAAAGGACTTGAAGGTGAAGTGTGCAGACATGAATGCTC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 998 TGCAAGAAATTGAGGAAGATTTAAAGGACTTGAAGGTGAAGTGTGCAGACATGGATGCTT 1057
Query 1070 TGCTTGAGTTCTTACGATGA 1089
||||||| ||||||||||||
Sbjct 1058 TGCTTGATTTCTTACGATGA 1077
Score = 228 bits (123), Expect = 1e-58
Identities = 197/231 (85%), Gaps = 12/231 (5%)
Strand=Plus/Plus
Query 265 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 324
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCGCTTGGGTGATTAAGAATTTCAACTCTTTG 60
Query 325 GATTCCGA-TAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGGGGTCTACT 383
||| || | |||||||||||||||||||||| ||||||| |||||||| ||| ||||| |
Sbjct 61 GATACC-ACTAGAGTTTACTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTAGT 119
Query 384 CGCCTATCCCAAGGGATATAATAA-TATTAATATCTATGATTACTTCTCTCTTTATATAT 442
||| ||||||||| || | ||| ||| | || || | || || |||| ||| ||| |
Sbjct 120 CGCTTATCCCAAGAGACGTGATAGGTAT-ACTA-CT-TCTTT-CT-CTCTGTTTCTATGT 174
Query 443 ATGTTCCTAATTCT-AAGTCTTTGCCTTCCGGATGGAGAAGACACGCTAAA 492
|||||| |||| || ||||||||||||||||||||||||| |||||||
Sbjct 175 --GTTCCTGATTCGGAA-TCTTTGCCTTCCGGATGGAGAAGACGCGCTAAA 222
Score = 209 bits (113), Expect = 4e-53
Identities = 204/246 (83%), Gaps = 13/246 (5%)
Strand=Plus/Plus
Query 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 60
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 262 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATCAAGAATTACAACTCTTTG 321
Query 61 GATTCCGATAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGCCATCTAGTC 120
| ||||| ||| ||||| |||||||||||| ||||||| |||||||| || | |||| ||
Sbjct 322 GGTTCCGGTAGTGTTTATTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTACTC 381
Query 121 GC-TTATCCCAAGAGATTTGATGAATGTAGTTATAGTAAATGTTACTCTT-TGTATCTAT 178
|| || ||||||| || || | | || | || || | || || || ||||| |||
Sbjct 382 GCCTT-TCCCAAGGGAAACAAT-A-TCTA-TGAT--TA--T-TT-CT-TTCTGTATATAT 430
Query 179 GTGTTTCTGATTCTAAATCTTTGCATTCCGGATGGAGAAGACACGCTAAATTTTCCTTGA 238
||||| || ||||| | ||||||| ||||||||||||||||| ||||||| |||| || |
Sbjct 431 GTGTTCCTAATTCTGAGTCTTTGCCTTCCGGATGGAGAAGACGCGCTAAAGTTTCTTTTA 490
Query 239 CTATGG 244
||||||
Sbjct 491 CTATGG 496
> AT2G01790.1 | Symbols: | TRAF-like family protein | chr2:341322-342480
REVERSE LENGTH=810
Length=810
Score = 889 bits (481), Expect = 0.0
Identities = 718/830 (87%), Gaps = 25/830 (3%)
Strand=Plus/Plus
Query 265 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAAC-TCTTT 323
||||||||||||||||||| ||||||||| ||||||||||| |||||| | | |||
Sbjct 1 ATGGGGAATCATCAAGCTGTTAAGAAGTT---GTGGGTGATTAACAATTTC-TCTTTTTT 56
Query 324 GGATTCCGATAGAGTTTACTCTGATACATTCCAGGCCGG-GCGTTGCAAATGGGGTCTAC 382
|||||||||||||||||| ||||||| |||| || ||| | | ||||||||| ||||||
Sbjct 57 GGATTCCGATAGAGTTTATTCTGATATATTCGTGGTCGGTG-GCTGCAAATGGTGTCTAC 115
Query 383 TCG-CCTATCCCAAGGGATATAATAATATTAATATCTATGATTACTTCTCTCTTTATATA 441
||| ||| |||| ||||| | ||| | | | ||||||||||||| |||||||| ||| ||
Sbjct 116 TCGCCCT-TCCCGAGGGAAACAAT-A-ACT-ATATCTATGATTATTTCTCTCTGTATCTA 171
Query 442 TATGTTCCTAATTCTAAGTCTTTGCCTTCCGGATGGAGAAGACACGCTAAATTTTCTTTT 501
| ||||||| ||||| ||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 172 TGTGTTCCTGATTCTGAGTATTTGCCTTCCGGATGGAGAAGACGCGCTAAAGTTTCTTTC 231
Query 502 ACTATGGTAACTCAAATTCCGGGAGAACTCTCCCTACAGCGAGAAGCAGAATATTGGTTT 561
|||||||||| |||| || ||||||||||||||| ||| | ||||| || ||| ||||||
Sbjct 232 ACTATGGTAAATCAAGTTACGGGAGAACTCTCCCAACAACAAGAAGGAGTATACTGGTTT 291
Query 562 GATCAAAAGAACACAA-CCAGGGGTTTTCAATCTATGTTTCTCCTTTCGGAGATTCAAAG 620
||| |||||||||||| ||| ||||||| ||||||||||| ||||| || | |||||||
Sbjct 292 GATGAAAAGAACACAACCCA-GGGTTTTGGATCTATGTTTCGCCTTTTGGTGTTTCAAAG 350
Query 621 CAGTCATAAAGGGTTTCTTGTAAACGGAGAAGTCAAGATTGTTGCAGAAGTAGATGT-GC 679
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 351 CAGTTATAAAGGGTTTCTTGTAAACGGAGAAGTCGATATTGTTGCAGAAGTAGATGTTG- 409
Query 680 TTGAAGTTATTGGTATAGTCGATGTACCCGAGAAACCAGAAAGCTTTGATATCAATGGGT 739
||||||||||||||| | | |||||| | ||| || |||||||| |||||| ||||||||
Sbjct 410 TTGAAGTTATTGGTAAATTAGATGTATCAGAGGAATCAGAAAGCATTGATAGCAATGGGT 469
Query 740 TTCAAGTCCCTGCTTCACAAGTAGATTCTGTGAACAGTCTGTTTAAAAAGTACCCAGGCT 799
|| | |||| ||||||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct 470 TTGACGTCCTTGCTTCACAAGTAGAATCTGTGAACAGTCTGTTTGGAAAGTACCCATGTT 529
Query 800 TTGCATCAAAAGTCTGTCCCAAGAACCCACATTTGAAGAAAACATACTTGAATGTTGTAC 859
||||||||||| |||||||||||| ||||| ||| ||||||| || | | | ||||
Sbjct 530 TTGCATCAAAACTCTGTCCCAAGACCCCACGTTTAAAGAAAA-AT----G--T-T-GTAC 580
Query 860 TAAGTCTGAATGAGATTATGTGCAAGTCCCCTGATAAACTCTCTAATGGTGATCTTGCTG 919
|||||||||||||||| |||||||||| || | ||||||||||||||||||| || |
Sbjct 581 AAAGTCTGAATGAGATTCTGTGCAAGTCTACTAAGGAACTCTCTAATGGTGATCTGGCCG 640
Query 920 ATGCATATTCTGCACTACGATATGTGACAAAAGCAGGGTTTAAGTTGGATTGGTTGGAGA 979
| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 641 AGGCATATTCTGCACTACGATTTGTTACGAAAGCAGGGTTTAAGTTGGATTGGTTGGAGA 700
Query 980 TGAAACTGAAAGAGACTGGTAAGACTAGGCTGCAAGAAATTGAGGAAGATTTAAAGGACT 1039
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 701 AGAAACTGAAAGAGACTGGTAAGAGTCGATTGCAAGAAATTGAGGAAGATTTAAAGGACT 760
Query 1040 TGAAGGTGAAGTGTGCAGACATGAATGCTCTGCTTGAGTTCTTACGATGA 1089
||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 761 TGAAGGTGAAGTGTGCAGACATGGATGCTCTGCTTGAGTTCTTGCGCTGA 810
> AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:1983901-1985341
FORWARD LENGTH=894
Length=894
Score = 128 bits (69), Expect = 1e-28
Identities = 424/587 (72%), Gaps = 58/587 (10%)
Strand=Plus/Plus
Query 431 CTCTTTATATATATGTTCCTAATTCTAAGTCTTTGCCT-TCCGGATGGAGAAGACACGCT 489
|||| ||| || | ||| ||||| ||| ||||| ||| | ||||||| ||||||| ||
Sbjct 179 CTCTGTATTTAAACGTTGCTAATAGTAAATCTTTCCCTAT-TGGATGGACAAGACACACT 237
Query 490 AAATTTTCTTTTACTATGGTAACTC-AAATTCCGGGAGAACTCTCCCTAC-AGCGAGAAG 547
||||||||| ||||| | |||| || ||| | | | | |||||||| || | | ||||
Sbjct 238 AAATTTTCTCTTACTTTAGTAAATCAAAAAT-CAGAAAAACTCTCCAAACTAAC-AGAAT 295
Query 548 CAGAATATTGGTTTGATCAAAAGAAC-AC-AACCAGGGGTTTTCAATCTATGTTTCTCCT 605
|| || | ||||||||||| ||| | || | || |||| |||| | ||||| | ||||
Sbjct 296 CACAACACTGGTTTGATCATAAG-TCTACTAGCC-GGGGGTTTCCAGCTATG-AT-TCCT 351
Query 606 TTCGGA-GATTCAAAGCAGTCA-TAA--AGGG-TTTCTTGTAAACGGAGAAGTCAAGATT 660
|| | | || ||| | | ||| |||| ||||| || || |||||| ||| ||
Sbjct 352 CTC--ACTAATC--TGCA-T-ACTAATGAGGGATTTCTGGTGAATGGAGAACTCACCCTT 405
Query 661 GTTG-CAGAAGTAGATGTGCTTGAAGTTATTGGTATAGTCGATGTACCCGAG-AA----- 713
|||| || | ||||| || ||||||||| | || | | | |||||| | || ||
Sbjct 406 GTTGCCA-AGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGAAATCTTC 464
Query 714 ACC----A--GAAAGCTTTGATATCAATGGGTTTCAAGTCCCTGCTTCACAAGTAGATTC 767
||| | |||| | | ||| |||||||||||||||| || | ||| || |||| ||
Sbjct 465 ACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGT-TCTTCCTCA-AA-TAGAATC 521
Query 768 TGTGAA-CAGTCTGTTT-AAAAAGTACCCAGGCT-TTGCAT-CAAAAGTCTGTCCCAAGA 823
||||| | || ||||| |||| ||| | | | |||||| |||| || |||| ||||
Sbjct 522 GGTGAATC-GTTTGTTTGCAAAA-CACCTA-GATATTGCATCCAAATTTC-GTCCAAAGA 577
Query 824 ACCCACATTTGAAGAAAACATACTTGAATGTTGTACTAAGTCTGAA-TGAGATTATGTG- 881
| ||| || |||||| | ||| |||||||| | ||||| || || ||| ||||
Sbjct 578 AACCATATATGAAGACGGCGTACATGAATGTTCTCCTAAG-CTTAACCAAGACGCTGTGC 636
Query 882 CAAGTCCCCTGATA-AACTCTCTAATGGTGATCT-TGCTGATGCATATTCTGCACT-ACG 938
||| || ||| | | | ||||| |||| |||| | | ||| |||| ||||||| ||
Sbjct 637 CAA-TCGCCTCA-AGATCTCTCCAATGATGATATAT-CTGGTGCAGGCGCTGCACTGAC- 692
Query 939 ATATGTGACAAAAGCAGGGTTTAAGTTGGATTGGTTGGAGATGAAAC 985
|||| ||| | |||||||||||||||||||||||||||||| |||||
Sbjct 693 ATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAAC 739
> AT3G58400.1 | Symbols: | TRAF-like family protein | chr3:21602667-21604063
REVERSE LENGTH=951
Length=951
Score = 76.8 bits (41), Expect = 4e-13
Identities = 117/151 (77%), Gaps = 16/151 (11%)
Strand=Plus/Plus
Query 844 TACTTGAATGTTG-TACTAAGTCTGAATGAGA--TTATGTGCAAGTCCCCTGATA-AACT 899
||| ||| | ||| |||| ||||||| ||||| |||| | | |||| ||| | | ||||
Sbjct 631 TACATGAGT-TTGCTACTCAGTCTGATTGAGACTTTATCT-C-AGTCACCTCA-AGAACT 686
Query 900 CTCTAATGG-TGATCTTG-CTGATGCATAT-TCTGCACTACGATATGTGACAAAA-GCAG 955
||| || || |||| ||| ||| | |||| | |||| | ||| | ||| |||| ||||
Sbjct 687 CTCCAA-GGATGAT-TTGTGTGACGTATATAT-TGCAATTGGATGTATGA-AAAATGCAG 742
Query 956 GGTTTAAGTTGGATTGGTTGGAGATGAAACT 986
|||||||||||||||||||||||| |||||
Sbjct 743 GGTTTAAGTTGGATTGGTTGGAGAACAAACT 773
> AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328792-16330265
FORWARD LENGTH=975
Length=975
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 23 AGAAGTTCACTTGGGTGATTAAGAATTTC 51
|||||||||||||||||||||||||||||
Sbjct 11 AGAAGTTCACTTGGGTGATTAAGAATTTC 39
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 287 AGAAGTTCACTTGGGTGATTAAGAATTTC 315
|||||||||||||||||||||||||||||
Sbjct 11 AGAAGTTCACTTGGGTGATTAAGAATTTC 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5