BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322871
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27420.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1079 0.0
> AT3G27420.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G40600.1);
Has 43 Blast hits to 43 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 39; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:10148585-10150301
FORWARD LENGTH=1004
Length=1004
Score = 1079 bits (584), Expect = 0.0
Identities = 683/732 (93%), Gaps = 1/732 (0%)
Strand=Plus/Plus
Query 1 ATGCCTAAAAGAACAGCAGAAGCGAGTCCATCAACTGAAGTTCAAAGAAACAAACCAGAT 60
|||||||||||||||||||||||| |||||||| ||||| | ||||||| || | ||||
Sbjct 108 ATGCCTAAAAGAACAGCAGAAGCGTGTCCATCATCTGAAATCCAAAGAAGCAGAGGAGAT 167
Query 61 ACTTTTGGTAATTACAGATCTCAAGTAGCTGAGCTTTTGTCTCAAGGTGAGAGGATCTCA 120
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 168 ACTTTTGGTAGTTACAGATCTCAAGTAGCTGAGCTTTTGTCTCTAGGTGAGAGGATCTCA 227
Query 121 CATCATGATCAACAACAAGCCAATGAGAGGCATTCTGAGAGTGTAATAGGAGATGGCATG 180
||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 228 CATCATGATCAACAAGAAGCCAATGAGAGGCATTCTGAGAGTGTTATAGGAGCTGGGATG 287
Query 181 TCGAATCTCGAGAAAGAGAATTTGAATGTTTTGTTAAGGCAGTGTGTGAGGAATCTAACT 240
|| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 288 TCAAATGTTGAGAAAGATAATTTGAATGTTTTGTTAAGGCAGTGTGTGAGGAATCTAAGT 347
Query 241 CCAGAAGTTGATGAGATGCAGGAATGTGTATGCTCTCTGTACCTGATTTCTCAGCTAGGG 300
|||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 348 CCAGAAGTTGATGAGATGCAGGAATGTGTACGCTCTCTGTATCTAATTTCTCAGCTAGGG 407
Query 301 AACAAATGTCAGTCATCCTCACCGAGCAATCTTGTTCCTGAAGAATCCGGAGGAGCGAGA 360
||||||||||||||||| || |||||| || |||||||||||||| ||||||||||||||
Sbjct 408 AACAAATGTCAGTCATCGTCGCCGAGCGATTTTGTTCCTGAAGAAACCGGAGGAGCGAGA 467
Query 361 GAAGATGATATTCAACTACTTCTGAGGTCTGACCCTGATATGGTCAAGAACATAACGTCC 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 468 GAAGATGATATTCAACTACTTCTGAGGTCTGACTCTGATATGGTCAAGAACATAACGTCA 527
Query 421 CAGTATTCAAATGTTCTGCTGTCTAAACTGGACAATATGCAGCAGGAACTCGAGAAACTT 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 528 CAGTATTCAAATGTTCTGCTGTCCAAACTGGACAATATGCAGCAGGAACTCGAGAGACTT 587
Query 481 CTTGATGATGTGGTGGCGACTTGCAGACCTATGACTCGTGTTGAAATTCGGGAGCTTCAG 540
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 588 CTTGACGATGTGGTGGCGACTTGCAGACCTATGACTCGTGGTGAAATTCGGGAGCTTCAG 647
Query 541 AAGTCAATCAAGGAGCTACCTGAAAGAAATCTCAACCGCGTCGCTGAAATAGTAGGAAAC 600
|| || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 648 AAATCGATCAAGGAGCTGCCTGAGAGGAATCTCAACCGCGTCGCTGAAATAGTAGGAAAT 707
Query 601 CATTACATAACATCTGACAAAGATTTCAACGATAAGGTTATCGTCAACCTGGATCAGGCG 660
|||| |||| |||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 708 CATTGCATAGCATCTGGCAGAGATTTCAACGATAAGGTTATCGTCAACCTTGATCAGGCG 767
Query 661 GACAACATCATGCTATGGAGATTGCATTTCTATGTACGAGCAGTCAAGAGTGCCCAGAAG 720
||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 768 GACAAGGTCATGTTATGGAGATTGCATTTCTATGTAGGAGCAGTCAAGAG-GCCCAGAAG 826
Query 721 CTCGCTCCCTAG 732
||||||||||||
Sbjct 827 CTCGCTCCCTAG 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5