BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322874
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27460.1 | Symbols: | SGF29 tudor-like domain | chr3:101592... 1218 0.0
AT5G40550.1 | Symbols: | SGF29 tudor-like domain | chr5:162410... 780 0.0
> AT3G27460.1 | Symbols: | SGF29 tudor-like domain | chr3:10159293-10162259
REVERSE LENGTH=1322
Length=1322
Score = 1218 bits (659), Expect = 0.0
Identities = 783/838 (93%), Gaps = 27/838 (3%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTCGCCGGACATTGCCGGAATCTTAGATAATACGAAGGAGCTTGATCGGTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 ATGTCGTCGTCGCCGGACATTGCCGGAATCTTAGATAATACGAAGGAGCTTGATCGGTTA 325
Query 61 AGGAAAGAACAAGAGGAAGTTCTTGTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 AGAAAAGAACAAGAGGAAGTTCTTGTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCT 385
Query 121 ACGCCTGAGATAGTTGAGAAGCCTGGTGATACTTCATTGTCAAAGCTTAAAAATTTGTAC 180
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 386 ACGCCGGAGATAGTTGAGAAGCCTGGTGATATTTCATTGTCAAAGCTTAAAAATTTGTAC 445
Query 181 ATTCAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAACATTCTGCTTACTCAG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 446 ATTCAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAATATTCTGCTTACTCAG 505
Query 241 TTGGATGCCCTGCTTCCATCTGGACCAACCGGGCAACAACGTAGAAAATTAGAAGGCAAC 300
|||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 506 TTGGATTCTCTGCTTCCATCTGGACCAACTGGGCAACAACGCAGAAAATTAGAAGGCAAC 565
Query 301 GAACAGAAGAGAAAGAGAATGAAAGTAGATTCAGATGTAACAAGAGTTTCTCCTTCCATG 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 566 GAACAGAAGAGAAAGAGAATGAAAGTAGATACAGATGTAACAAGAGTTTCTCCTTCCATG 625
Query 361 AGAAATCAAATCGAGGCATATGCCAGTCTTAAGGGTGAACAGGTTGCTGCAAGAGTCACA 420
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 626 AGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGGTTGCTGCAAGAGTCACA 685
Query 421 GCCGAGGATGCCGAGAAGGATGAATGGTTTGTGGTAAAAGTTATTCACTTCGACAGAGAA 480
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 686 GCTGAAGATGCCGAGAAGGATGAATGGTTTGTGGTGAAAGTTATTCACTTCGACAGAGAA 745
Query 481 ACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAGGTGGCCAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 ACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAGGTGGCCAG 805
Query 541 AGGACATATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAATGATCCTTCA 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AGGACGTATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAATGATCCTTCA 865
Query 601 AGCACACAAGAGTTTCTACCAGGGAAACACGTGTTAGCTGTATATCCAGGAACCACAGCC 660
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 866 AGCACACAAGAGTTTATACCAGGGAAACACGTCTTAGCTGTATATCCAGGAACCACAGCC 925
Query 661 CTCTACAAGGCAACTGTAATAAGTACCCCACGAAAGGTTAGCTATCTTCTGCACCATTTC 720
||||||||||||||||| |||||||||||||||||| || | | ||| || | |
Sbjct 926 CTCTACAAGGCAACTGTTATAAGTACCCCACGAAAG---AGGAAA-T-CTG-ACGAGT-- 977
Query 721 AAGCTCATTTCAACAATGTACTTGCTAGAATTTGATGATGATGAAGAAGACGGAGCATTA 780
| || | | | ||| | | | | | |||||||| | |||||||||||||||
Sbjct 978 A--CT--TG-CTAGAAT-T--T-G--A---T--GATGATGA--A-GAAGACGGAGCATTA 1018
Query 781 CCTCAAAGAACAGTGCCATTCCACAAAGTTGTAGCTTTACCAGAAGGCCACCGCCAGT 838
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1019 CCTCAAAGAACAGTGCCATTCCACAAAGTGGTAGCTTTACCAGAAGGCCATCGCCAGT 1076
> AT5G40550.1 | Symbols: | SGF29 tudor-like domain | chr5:16241068-16243381
FORWARD LENGTH=1320
Length=1320
Score = 780 bits (422), Expect = 0.0
Identities = 717/852 (84%), Gaps = 49/852 (6%)
Strand=Plus/Plus
Query 6 GTCGTCGCCGGACATTGCCGGAATCTTAGATAATACGAAGGAGCTTGATCGGTTAAGGAA 65
|||||| || ||||||| |||||| || || || |||||||| |||||||||||||||||
Sbjct 220 GTCGTCACCAGACATTGTCGGAATTTTGGAAAACACGAAGGAACTTGATCGGTTAAGGAA 279
Query 66 AGAACAAGAGGAAGTTCTT-GTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCTACGC 124
||| ||||| |||||| || || ||||| |||||||||||||| |||||||||||| | |
Sbjct 280 AGACCAAGAAGAAGTT-TTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCTC 338
Query 125 CTGAGATAGTTGAGAAGCCTGGTGATACTTCATT-GTCAAAGCTTAAAAATTTGTACATT 183
||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 339 CTGAGATAGTTGAGAAGCCTGGTGATATTTCATTAG-CAAAGCTTAAGAATTTGTACATT 397
Query 184 CAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAACATTCTGCTTACTCAGTTG 243
||||| |||||||| ||||||| |||||||||||| || |||||| ||||||||||||||
Sbjct 398 CAAGCGAAAGAGCTCTCAGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAGTTG 457
Query 244 GATGCCCTGCTTCCATCTGGACCAACCGGGCAACAACGTAGAAA---A----T--T---A 291
||| |||||||||| ||||||||| ||||| ||| | ||||| | | | |
Sbjct 458 GATTTGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAGTTAGGCGTGGTGGCA 517
Query 292 GAAGGCAACGAACAGAAGAGAAAGAGAATGAAAGTAGATTCAGATGTAACAAGAGTTTCT 351
||||| || || |||||||| ||||| |||||||| ||||||||||||| |||| |||||
Sbjct 518 GAAGGTAATGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCT 577
Query 352 CCTTCCATGAGAAATCAAATCGAGGCATATGCCAGTCTTAAGGGTGAACAGGTTGCTGCA 411
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 578 CCTTCCATGAGAAATCAAATCGAAGCATATGCAAGTCTTAAGGGTGAACAGGTTGCTGCA 637
Query 412 AGAGTCACAGCCGAGGA-TGCCGAGAAGGATGAATGGTTTGTGGTAAAAGTTATTCACTT 470
||||| || || || || ||| || |||||||||||||||||||| ||||||||||||||
Sbjct 638 AGAGTTACTGCAGA-GAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTTATTCACTT 696
Query 471 CGACAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CGATAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 756
Query 531 AGGTGGCCAGAGGACATATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAA 590
| | || |||||||| ||||| | |||||| ||| |||||||| || ||||| || ||
Sbjct 757 AAGCGGTCAGAGGACCTATAAGTTGCCAATGTTATGCATTTTACCATTCCCAAAGCGAAA 816
Query 591 TGATCCTTC-AAGCACACAAGAGTTTCTACCAGGG-AAACACGTGTTAGCTGTATATCCA 648
|||||||| || ||| |||||||||| ||| ||| |||||||| ||||||||||||||
Sbjct 817 CGATCCTTCGAA-CACCCAAGAGTTTCCACC-GGGTAAACACGTCTTAGCTGTATATCCC 874
Query 649 GGAACCACAGCCCTCTACAAGGCAACTGTAATAAGTACCCCACGAAAGGTTAGCTATCTT 708
|| || ||||| |||||||| ||||||||| ||||||||||||||||| || | |
Sbjct 875 GGGACAACAGCACTCTACAAAGCAACTGTAGTAAGTACCCCACGAAAG---AGGAAG-T- 929
Query 709 CTGCACCATTTCAAGCTCATTTCAACAATGTACTTGCTAGAATTTGATGATGATGAAGAA 768
||| || | | | |||| | |||| | | || || |||||||| |||
Sbjct 930 CTG-ACGA------G-T-ATTT-------G--CTTG--A-A-TTCGACGATGATGAGGAA 967
Query 769 GACGGAGCATTACCTCAAAGAACAGTGCCATTCCACAAAGTTGTAGCTTTACCAGAAGGC 828
|| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 968 GATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGT 1027
Query 829 CACCGCCAGTGA 840
|| |||||||||
Sbjct 1028 CATCGCCAGTGA 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5