BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322901
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27810.1 | Symbols: ATMYB21, ATMYB3, MYB21 | myb domain prot... 1147 0.0
AT3G27809.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 394 6e-109
AT5G40350.1 | Symbols: MYB24, AtMYB24 | myb domain protein 24 |... 370 1e-101
AT5G40348.1 | Symbols: | other RNA | chr5:16136594-16141163 FO... 154 1e-36
> AT3G27810.1 | Symbols: ATMYB21, ATMYB3, MYB21 | myb domain protein
21 | chr3:10307421-10310308 FORWARD LENGTH=1071
Length=1071
Score = 1147 bits (621), Expect = 0.0
Identities = 661/681 (97%), Gaps = 0/681 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAGAGGAGGAGGGAGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATGGAGAAAAGAGGAGGAGGAAGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTG 235
Query 61 AGAAAAGGACCATGGACGATGGAAGAAGATCTTATTCTTATCAACTATATCGCCAACCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGAAAAGGACCATGGACGATGGAAGAAGATCTTATTCTTATCAACTATATCGCCAACCAC 295
Query 121 GGCGATGGTGTTTGGAATTCTCTCGCCAAATCTGCAGGTCTAAAACGCACCGGAAAAAGT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 296 GGCGATGGTGTTTGGAATTCTCTCGCCAAATCTGCAGGTCTAAAACGAACCGGGAAAAGT 355
Query 181 TGCCGGCTCCGGTGGCTGAACTATCTCCGCCCCGACGTACGACGGGGAAACATCACGCCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 356 TGCCGGCTCCGGTGGCTGAACTATCTCCGCCCCGACGTACGACGGGGAAACATCACTCCA 415
Query 241 GAGGAGCAACTTATCATCATGGAACTTCATGCTAAGTGGGGAAACAGGTGGTCAAAAATC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 GAAGAGCAACTTATCATCATGGAACTTCATGCTAAGTGGGGAAACAGGTGGTCGAAAATC 475
Query 301 GCCAAACATCTTCCAGGAAGAACCGACAACGAAATCAAAAATTTCTGGAGGACAAGAATT 360
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 476 GCCAAACATCTTCCAGGAAGAACGGACAACGAGATCAAAAATTTCTGGAGGACAAGAATT 535
Query 361 CAAAAATACATCAAGCAAGCGGATGTAACAACAACATCCTCCGTTGGATCTCATCATAGC 420
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 536 CAAAAATACATCAAGCAATCGGATGTAACAACAACATCGTCCGTTGGATCTCATCATAGC 595
Query 421 TCAGAGATCAACGATCAAGCTGCAAGCACGTCGAGCCATAATGTCTTTTGTACACAAGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCAGAGATCAACGATCAAGCTGCAAGCACGTCGAGCCATAATGTCTTTTGTACACAAGAT 655
Query 481 CAAGCGATGGAGACTTATTCTCCTACACCAACGTCGTATCAACATACCAATATGGAATTC 540
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 656 CAAGCGATGGAGACTTATTCTCCTACACCGACATCATATCAACATACCAATATGGAATTC 715
Query 541 AACTACGGTAACTATTCGGCCGCGGCACCAACAGCAACCGTGGATTATCCAATACCGATG 600
||||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 716 AACTATGGTAACTATTCGGCCGCGGCAGTGACGGCAACCGTGGATTATCCAGTACCGATG 775
Query 601 ACCGTTGATGATCAAACCGGTGAAAACTATTGGGGCATGGATGATATTTGGTCATCAATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ACCGTTGATGATCAAACCGGTGAAAACTATTGGGGCATGGATGATATTTGGTCATCAATG 835
Query 661 CATTTACTGAATGGTAATTGA 681
|||||| ||||||||||||||
Sbjct 836 CATTTATTGAATGGTAATTGA 856
> AT3G27809.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10307417-10308403
REVERSE LENGTH=450
Length=450
Score = 394 bits (213), Expect = 6e-109
Identities = 267/289 (92%), Gaps = 19/289 (7%)
Strand=Plus/Minus
Query 1 ATGGAGAAAAGAGGAGGAGGGAGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 271 ATGGAGAAAAGAGGAGGAGGAAGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTG 212
Query 61 AGAAAAGGACCATGGACGATGGAAGAAGATCTTATTCTTATCAACTATATCGCCAACCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 AGAAAAGGACCATGGACGATGGAAGAAGATCTTATTCTTATCAACTATATCGCCAACCAC 152
Query 121 GGCGATGGTGTTTGGAATTCTCTCGCCAAATCTGCAGGTCTAAAACGCACCGGAAAAAGT 180
|||||||||||||||||||||||||||||||| | || |||| | |
Sbjct 151 GGCGATGGTGTTTGGAATTCTCTCGCCAAATC-G--GG---AAAA-G------------T 111
Query 181 TGCCGGCTCCGGTGGCTGAACTATCTCCGCCCCGACGTACGACGGGGAAACATCACGCCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 110 TGCCGGCTCCGGTGGCTGAACTATCTCCGCCCCGACGTACGACGGGGAAACATCACTCCA 51
Query 241 GAGGAGCAACTTATCATCATGGAACTTCATGCTAAGTGGGGAAACAGGT 289
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 GAAGAGCAACTTATCATCATGGAACTTCATGCTAAGTGGGGAAACAGGT 2
> AT5G40350.1 | Symbols: MYB24, AtMYB24 | myb domain protein 24
| chr5:16138544-16141134 REVERSE LENGTH=992
Length=992
Score = 370 bits (200), Expect = 1e-101
Identities = 307/357 (86%), Gaps = 13/357 (4%)
Strand=Plus/Plus
Query 22 AGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTGAGAAAAGGACCATGGACGATG 81
|||||||| || || || ||||| ||| ||||| ||||||||||| ||||||||||||
Sbjct 204 AGTAGTGGTGGGTCTGG---ATCAGGAGATGCAGAGGTGAGAAAAGGGCCATGGACGATG 260
Query 82 GAAGAAGATCTT-ATTCTTATCAACTATATCGCCAACCACGGCGATGGTGTTTGGAATTC 140
||||||||| || ||||| ||||| ||||||||||| || || || ||||||||||| ||
Sbjct 261 GAAGAAGAT-TTGATTCTCATCAATTATATCGCCAATCATGGTGAAGGTGTTTGGAACTC 319
Query 141 TCTCGCCAAATCTGCAGGTCTAAAACGCACCGGAAAAAGTTGCCGGCTCCGGTGGCTGAA 200
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 320 TCTCGCCAAATCTGCAGGACTAAAACGCACCGGGAAAAGTTGCCGGCTCCGGTGGCTGAA 379
Query 201 CTATCTCCGCCCCGACGTACGACGGGGAAACATCACGCCAGAGGAGCAACTTATCATCAT 260
||| ||||| || || || ||||||||||| ||||| ||||| || || || | ||||||
Sbjct 380 CTACCTCCGACCTGATGTGCGACGGGGAAATATCACACCAGAAGAACAGCTCACCATCAT 439
Query 261 GGAACTTCATGCTAAGTGGGGAAACAGGTGGTCAAAAATCGCCAAA-CATCTT-CCAGGA 318
|||||||||||| || |||||||| |||||||||||||| || ||| ||| || ||||||
Sbjct 440 GGAACTTCATGCAAAATGGGGAAATAGGTGGTCAAAAATTGC-AAAGCAT-TTACCAGGA 497
Query 319 AGAACCGACAACGAAATCAAA-AATTTCTGGAGGAC-AAGAATTCAAAAATACATCA 373
||||||||||| || || ||| ||||| |||||||| |||| | || ||||||||||
Sbjct 498 AGAACCGACAATGAGAT-AAAGAATTTTTGGAGGACTAAGA-TCCAGAAATACATCA 552
> AT5G40348.1 | Symbols: | other RNA | chr5:16136594-16141163
FORWARD LENGTH=576
Length=576
Score = 154 bits (83), Expect = 1e-36
Identities = 195/245 (80%), Gaps = 24/245 (10%)
Strand=Plus/Minus
Query 22 AGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTGAGAAAAGGACCATGGACGATG 81
|||||||| || || || ||||| ||| ||||| ||||||||||| ||||||||||||
Sbjct 344 AGTAGTGGTGGGTCTGG---ATCAGGAGATGCAGAGGTGAGAAAAGGGCCATGGACGATG 288
Query 82 GAAGAAGATCTT-ATTCTTATCAACTATATCGCCAACCACGGCGATGGTGTTTGGAATTC 140
||||||||| || ||||| ||||| ||||||||||| || || || ||||||||||| |
Sbjct 287 GAAGAAGAT-TTGATTCTCATCAATTATATCGCCAATCATGGTGAAGGTGTTTGGAA--C 231
Query 141 TCTCGCCAAATCTGCAGGTCTAAAACGCACCGGAAAAAGTTGCCGGCTCCGGTGGCTGAA 200
||| | || || | ||| || || ||||||||||||||||||||||||||
Sbjct 230 TCT---C---TC-GC----C-AAATCG----GG-AAAAGTTGCCGGCTCCGGTGGCTGAA 188
Query 201 CTATCTCCGCCCCGACGTACGACGGGGAAACATCACGCCAGAGGAGCAACTTATCATCAT 260
||| ||||| || || || ||||||||||| ||||| ||||| || || || | ||||||
Sbjct 187 CTACCTCCGACCTGATGTGCGACGGGGAAATATCACACCAGAAGAACAGCTCACCATCAT 128
Query 261 GGAAC 265
|||||
Sbjct 127 GGAAC 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5