BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322924

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28190.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   532    7e-151


> AT3G28190.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 2 Blast hits to 2 
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:10512235-10513057 FORWARD LENGTH=339
Length=339

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 323/340 (95%), Gaps = 1/340 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAATCTGGAGCTATATGGGGAAAACATCAGTATTCATATTTGGTCTTGGATTCTAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGGAATCTGGAGCTATATGGGGAAAACATCAGTATTCATATTTGGTCTTGGATTCTAC  60

Query  61   ACGCATGCTGCTTTATTCTCTAATTCAGATAATAAGATGCTTATGACTCAGTTGGAATCC  120
            ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   ACTTATGCTGCTTTATTCTCTAACTCAGATAATAAGATGCTTATGACTCAGTTGGAATCC  120

Query  121  TTCAAAGAGACTGTTAAGGTTCAGATGGAGTCCTTTAAAGAGCCATCTAAAGCTCAAATG  180
            ||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct  121  TTCAAAGAGACGGTTAAGGTTCAAATGGAGTCGTTTACAGAGCCATCTAAAGCTCAAATG  180

Query  181  GCTAAGTATAGAGAAATGGACCAAAAGTTTGAAGCTAAGTATAAAGAAATGGAAAATAAG  240
            |||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||
Sbjct  181  GCTAAGTATAGAGAAATGGAACAAAAGATGGAAGCTAAGTATAGAGAAATGGAAAATAAG  240

Query  241  TTGGACAATCTTGTGAAGTTGTCTATGACTCAAATCTCCGAATTGAAAGTAACTAGAGAG  300
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  241  TTGGACAATCTTGTGAAGTTGTCTATGACTCAAATCTCCGAGTTGAAAGTAACTAGAGAG  300

Query  301  AAGTGTTGCAATGATTTGTGGAAAGCAAGAAAATACATAG  340
            ||||||||||||||||| |||||| ||||||  |||||||
Sbjct  301  AAGTGTTGCAATGATTTCTGGAAATCAAGAAG-TACATAG  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5