BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322953
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28760.2 | Symbols: | CONTAINS InterPro DOMAIN/s: 3-dehydro... 1731 0.0
> AT3G28760.2 | Symbols: | CONTAINS InterPro DOMAIN/s: 3-dehydroquinate
synthase, prokaryotic-type (InterPro:IPR002812); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr3:10792955-10795304 REVERSE LENGTH=1506
Length=1506
Score = 1731 bits (937), Expect = 0.0
Identities = 1121/1208 (93%), Gaps = 20/1208 (2%)
Strand=Plus/Plus
Query 78 AGAAAGATTAGAACTTGATAGATTACTGTTGTGGAGCTCTCATAAGAAGAATCATAAATT 137
||||||||||||||||||||||||||| ||||||||||||||| ||||| | |
Sbjct 144 AGAAAGATTAGAACTTGATAGATTACTATTGTGGAGCTCTCATCAGAAG--------A-T 194
Query 138 GATTAGATTTAGTAAAAGAACGTTTTCTCAGA-AACTTGCTGTGAAAATGTCTGCTTCAA 196
| |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 195 -A--AGATTTAGTAAAAGAACGTTTTCTCAGAGAA-TTGTTGTGAAAATGTCTGCTTCAA 250
Query 197 CTTTGCCTATGAATCTTGGCAAAGCAAAGAAGGTTTGGATATGGACTGA-GTGCAAAGAG 255
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 251 CTTTGCCTATGAATCTTGGCAAAGCAAAGAAGGTTTGGATATGGACT-ATGTGCAAAGAA 309
Query 256 GCCATGACAGTCGCGGTGGAACGAGGATGGAACACATTTATATTCTCATCGGACAATCGA 315
| |||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 310 GTCATGACCGTTGCGGTGGAACGAGGCTGGAACACATTTATATTCTCATCGGATAATCGA 369
Query 316 GAACTATCCGATGAGTGGTCATCGATTGCGTTGATGGATACATTGTTTATTGAAGAGAAG 375
|||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 370 AAACTATCCAATGAGTGGTCATCTATTGCATTGATGGATACATTGTTTATTGAAGAGAAG 429
Query 376 CAAGTTGTTGATGGTACGGGGAATGTTGTTGCTTCGGTCTTTGAGGTTTCAACACCCGAG 435
||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 430 AAAGTTATTGATGGTACGGGGAACGTTGTAGCTTCGGTCTTTGAGGTTTCAACACCCGAG 489
Query 436 GAGCTACGGAATTTGAAGATCGAAAATGAACAGGCGGAAAATATTGTTCTTGATTTCTTA 495
||||| |||| |||||| |||||||| || ||| || |||||||||||||||||||||
Sbjct 490 GAGCTTCGGAGTTTGAATATCGAAAACGAGCAGATAGAGAATATTGTTCTTGATTTCTTA 549
Query 496 GACTGGAAGTCAATCCCGGCGGAAAATCTAGTGGCGGCTCTTCAAGGAAGTGAGAAAACA 555
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GACTGGAAGTCAATCCCAGCGGAAAATCTAGTGGCGGCTCTTCAAGGAAGTGAGAAAACA 609
Query 556 GTATTTGCCA-TTTCAAATAATCCCTCGGAAGCAAAACTATTCCTCGAGGCTTTAGAGCA 614
||||||| || ||||||||| |||||| || || ||||||||||| ||||||||||||||
Sbjct 610 GTATTTG-CAGTTTCAAATACTCCCTCAGAGGCTAAACTATTCCTAGAGGCTTTAGAGCA 668
Query 615 TGGACTTGGCGGAATCATTCTTAAGTCTGAGGATGTTAAAGCTGTTCTTGATCTAAAGGA 674
||| || || |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 669 TGGTCTCGGTGGAATCATTCTTAAATCCGAGGATGTTAAAGCTGTTCTTGATCTAAAGGA 728
Query 675 ATACTTTGACAAGAGAAACGAAGAAAGTGATACATTAAGTTTGACGGAAGCTACTATAAC 734
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 729 ATACTTTGACAAGAGAAACGAAGAAAGTGATACATTAAGCTTAACGGAAGCTACTATAAC 788
Query 735 TCGGGTTCAAATGGTCGGTATGGGAGACCGAGTCTGTGTTGATCTTTGCAGCCTCATGAG 794
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 789 TCGGGTTCAAATGGTCGGTATGGGAGACCGAGTCTGTGTTGATCTTTGTAGCCTAATGAG 848
Query 795 ACCCGGTGAAGGTCTTCTTGTTGGATCTTTTGCGAGAGGACTATTCTTAGTCCACTCAGA 854
||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 849 ACCCGGTGAAGGTCTTCTTGTTGGATCTTTTGCTAGAGGACTCTTCTTGGTTCACTCAGA 908
Query 855 ATGCTTGGAGTCTAATTACATCGAAAGCAGACCATTTAGAGTTAACGCTGGGCCGGTGCA 914
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 909 ATGCTTGGAGTCTAATTACATTGAAAGCAGACCATTTAGAGTTAACGCTGGGCCGGTGCA 968
Query 915 CGCTTATGTCGCAGTTCCAGGTGGAAAGACTTGTTACCTCTCGGAGTTAAGGACAGGAAG 974
|||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 969 CGCTTATGTCGCTGTACCAGGTGGAAAGACGTGTTACCTCTCGGAGTTAAGGACGGGAAG 1028
Query 975 AGAGGTAATCGTTGTTGATCAGAAAGGAAAACAGCGGACAGCAGTCGTTGGGCGAGTTAA 1034
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1029 AGAGGTAATTGTTGTTGATCAGAAAGGAAAACAGCGGACAGCAGTCGTTGGGCGAGTGAA 1088
Query 1035 AATCGAGAAGCGTCCACATATTCTTGTGGAGGTTAAGCTTAGCGCAAAGGAGGAGGAAAC 1094
||| ||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 1089 AATAGAGAAGCGTCCACTTATTGTTGTGGAGGCTAAGCTTAGCACAAAGGAGGAGGAAAC 1148
Query 1095 GGTTTTTAGCATTATCCTGCAGAACGCAGAAACAGTTGCATTAGTCACTCCTCATCAAGT 1154
|| | ||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGTGTATAGTATCATCTTGCAGAACGCAGAAACAGTTGCATTAGTCACTCCTCATCAAGT 1208
Query 1155 AAACTCATCTGGCA-AAACCGCTGTTCCCGTGACCTCTCTGAAACCCGGGGATCAAGTTT 1213
||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1209 AAACTCATCAGG-ACGAACCGCTGTTCCCGTGACCTCGCTGAAACCCGGGGATCAAGTTT 1267
Query 1214 TGATCAGATTACAGGGCGGTGCACGCCATACCGGTATAGAGATTCAGGAATTCATTGTCG 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TGATCAGATTACAGGGCGGTGCACGCCATACCGGTATAGAGATTCAGGAATTCATTGTCG 1327
Query 1274 AGAATTGA 1281
|||| |||
Sbjct 1328 AGAACTGA 1335
Score = 139 bits (75), Expect = 6e-32
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTGTCTTTGGTCTCCTCTGTTTCTTACATCAAATCCTCATACCAATTCCATTGT 60
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCTTTGCCTTTGGTCTCCTCTGTTTCTTACATCAAATCCTCAAACCAATTCCATTGT 60
Query 61 TGTTTCTCTCTGAGAAAAGAAAGATTAGAACTT 93
| |||||||||||||||||||| ||| || |||
Sbjct 61 TCTTTCTCTCTGAGAAAAGAAAAATTTGAGCTT 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5