BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322957
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28810.1 | Symbols: | Protein of unknown function (DUF1216)... 1626 0.0
AT3G28820.1 | Symbols: | Protein of unknown function (DUF1216)... 1504 0.0
AT3G28980.1 | Symbols: | Protein of unknown function (DUF1216)... 510 1e-143
AT3G28790.1 | Symbols: | Protein of unknown function (DUF1216)... 91.6 2e-17
> AT3G28810.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10822471-10823941 REVERSE LENGTH=1305
Length=1305
Score = 1626 bits (880), Expect = 0.0
Identities = 1198/1344 (89%), Gaps = 51/1344 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAGAGTTCAGCTATTTTTATGCTTTACCATTCTTTTTGCATCTGTGACTCTTCTG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCAAGAGTTCAGCTATTTTTATGCTTTACCATTCTTTTTGCATCAGTGACTCTTCTG 60
Query 61 GACGTCGTTTCAGCTCATTTGAAGCTTAAGCCAACTTTGCCTCAGATCGAACCTCCCCAG 120
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 61 GACATCGTTTCAGCTCATTTGAAGCTTAAGCCAACTTTGCCTCAGATTGAACCTCCACAA 120
Query 121 ACGGTGAAGGATGTGGAACCTTACACCGTTAAAGTAGTGATGGTCTTTGTGTCAGACCTC 180
||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 121 ACGTTGAAGGATGTTGAACCTTACACCGTTAAAGTAGTGATAGTCTTTGTGTCCGACCTC 180
Query 181 GAGAAAGAATGTCCCAAGACAAATAAATTTAAGGCCTTCTTTGAGAAACTCAGGGCATAC 240
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
Sbjct 181 GAGAAAGAATGTCCCAAGACAAATAAATTCAAGGCTTTCTTTGAGAAACTTAGGGCATTC 240
Query 241 GCCAAGTATGTTTGCCCAATAAAAAGAAAAGACCAAGTAGATTACGACCGAGACATGAAG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCAAGTATGTCTGCCCAATAAAAAGAAAAGACCAAGTAGATTACGACCGAGACATGAAG 300
Query 301 GCCAAGGCCGGAGGCCTCTTCC-AGACCATATCTTCTTTTGCCATTGGAAAGATAAAAAA 359
|||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 301 GCCAAGGCTGGAGGCCTCTTCCAAG-TCATATCTTCTTTTGCGATTGGAAAGATAAAAAA 359
Query 360 GGAAATTCAAGAGGAGAAAATGGAAGTCATTAATACCTTTAAGTTTATGAGATTTCTTGC 419
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGAAATTCAAGAGGATAAAATGGAAGTTATTAATACCTTTAAGTTTATGAGATTTCTTGC 419
Query 420 GGCTAAGATTATGGGAAGCCGCAAAAAGGATGAGAGCGAGGAATCAATGAAGCTAACAGC 479
| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GACTAAAATTGTGGGAAGCCGCAAAAAGGAGGAGAGCGAGGAATCAATGAAGCTAACAGC 479
Query 480 AGAACAACAAAAAGAAATCAATGAAGGAATCTTAAGATGGGAAACAATTATTGCTCGGAT 539
||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||
Sbjct 480 AGAACAACAAAAAGAAATCAAAGAAGGGATCTTAAGATGGGAAACAATCATTACTCGGAT 539
Query 540 CACAAACACAATGGTAAT-GAGTACAAAAAA-T-T-CTTCTTCTAGTGAAAACTCTACTA 595
|||||||||||||||| | ||| |||| || | | ||||||| | |||| | |||| |
Sbjct 540 CACAAACACAATGGTA-TCGAGCACAACCAACTCTGCTTCTTCCAATGAAGAGTCTAGTG 598
Query 596 CGGGGAAGGAAGCTTCAAGCGGCAGCAGCAAAAAAGGAGGCTCTTCCGAAGACACTAA-A 654
||||| |||||||| |||| | |||||||| | |||| |||| | | | |
Sbjct 599 TTGGGAAAGAAGCTTCCAGCGAAAACAGCAAAA--G----CTCTGGTAAAGAAAGTGAGA 652
Query 655 GGTGCAAACACTAACAAGGGTGGAAGTCCATCCAGCAGCCCATC-TG---GTTCAAGCTC 710
| | | | |||| | || || |||| | || | || | || || ||| |
Sbjct 653 GTT-C---CGCTAA-A-GG-TGAAAGTG-AGACATCCGCTAAAGGTGAAAGT--AAGA-C 701
Query 711 TTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAACTACCGGTGGAAGCTCTACAAG 770
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 702 TTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAAGTGCTGGTGGAAGCTCTACAAG 761
Query 771 CGCTACTCAAAAGGAAAGCTCCGCTAGTGGAAATGTTGGCGCTAGTCAGAGCAGTGGTGT 830
||||||| ||| | || | | || ||| |||||||||||||||||||||
Sbjct 762 CGCTACT-AAA-G-AA-G-------A----AA--GTTC-CGCTAGTCAGAGCAGTGGTGT 803
Query 831 AACAGT-AGCACAAGTTGAGGAAGAGACTTCCAAAGATGTCTCGACATTCATAATGAACC 889
|||||| | ||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 804 AACAGTGA-CACAAGTCGAGGAAGAGACGTCCAAAGATGTTTCGACATTCATAATGAACC 862
Query 890 TCGAAAAGAAATGTCCGCAAAAAGAGGAATTTAAGGTCTTCTTCGAGCAACTCAAGGGTA 949
|||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 863 TCGAAAAGAAGTGTCCACAAAAGGAGGAATACAAGGTCTTCTTCGAGCAACTCAAGGGTA 922
Query 950 CAATGACTGCTCCCGCCAAAGAAAGAAAAGGTTTGTTTTCTAGGATTAAATCTGCTGCTG 1009
|||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 923 CAATGATTGCTCCCCCCAAAGAAAGAAAAGGTTTATTTTCTAGGATTAAATCTGCTGCTG 982
Query 1010 GGAAACTATCTGGTGCGATGGCAGTTATGCGATCTAGAATTGGAAGCAAATCAGCAGAGG 1069
| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 983 GTAAACTATCGGGTGCGATGGGAGTTATGCGGTCTAGAATTGGAAGCAAATCAGCAGAGG 1042
Query 1070 TTAAAAAGTCTATGGAAACTTACCAAGAACAAGTGATGAAAACTCTCCAAGAGTTAGATA 1129
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1043 TTAAAAAGTCTATGGAAACTTACCAAGAGCAAGTGATGAAAACTCTTCAAGAGTTAGATA 1102
Query 1130 CCATTCACAGTCAAATTGTGAGTCAGAATAAAGGAAAGAAAGAAGGATCTTTGACATGCA 1189
|||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1103 CCATCCACAGTCAAATTGTGAGTCAGAACCAAGGCAAGAAAGAAGGATCTTTGACATGCA 1162
Query 1190 CACCAGCACAACAAACTCAGATTAAG-CAGACAATTACTAAGTGGGAACAAGTCACAACC 1248
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1163 CACCAGCACAACAAACACAGATTAAGACA-ACAATTACTAAGTGGGAACAAGTCACAACC 1221
Query 1249 CAATTCGTGGAGACCGCTATTCAGAGCGAGACAAAGTCTTCGTCAACTACTTCATCTTCT 1308
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1222 CAATTCGTAGAGACCGCTATTCAGAGCGAGACAAAGTCATCATCAACTACTTCATCTTCT 1281
Query 1309 GTCGGCAAGATGAACACAAACTGA 1332
|| ||||| ||||||||||| |||
Sbjct 1282 GTTGGCAAAATGAACACAAATTGA 1305
> AT3G28820.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10827647-10829396 FORWARD LENGTH=1372
Length=1372
Score = 1504 bits (814), Expect = 0.0
Identities = 1179/1347 (88%), Gaps = 57/1347 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAGAGTTCAGCTATTTTTATGCTTTACCATTCTTTTTGCATCTGTGACTCTTCTG 60
|||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||
Sbjct 68 ATGGCAAGAGTTCAGCTATTGTTATGCTTCACCATTCTTTTTGCATCAGTGAATCTTCTG 127
Query 61 GACGTCGTTTCAGCTCATTTGAAGCTTAAGCCAACTTTGCCTCAGATCGAACCTCCCCAG 120
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 128 GACGTTGTTTCAGCTCATTTGAAGCTTAAGCCAACTTTGCCTCAGATTGAACCTCCACAA 187
Query 121 ACGGTGAAGGATGTGGAACCTTACACCGTTAAAGTAGTGATGGTCTTTGTGTCAGACCTC 180
||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 188 ACGTTGAAGGATGTTGAACCTTACACCGTTAAAGTAGTGATGGTCTTTGTGTCCGACCTC 247
Query 181 GAGAAAGAATGTCCCAAGACAAATAAATTTAAGGCCTTCTTTGAGAAACTCAGGGCA-TA 239
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 248 GAGAAAGAATGTCCCAAGACAAATAAATTTAAGACTTTCTTTGAGAAACTCAGGGCAGT- 306
Query 240 CGCCAAGTATGTTTGCCCAATAAAAAGAAAAGACCAAGTAGATTACGACCGA-GACATGA 298
|||||| ||||||||||||||| |||| ||||| |||||||||||||| | | |||||||
Sbjct 307 CGCCAAATATGTTTGCCCAATACAAAGGAAAGATCAAGTAGATTACGA-CAAGGACATGA 365
Query 299 AGGCCAAGGCCGGAGGCCTCTTCCA-GACCATATCTTCTTTTGCCATTGGAAAGATAAAA 357
|||||||||||||||| ||| | || | ||||||||||||| || |||||||||||||||
Sbjct 366 AGGCCAAGGCCGGAGGTCTCGT-CAGGGCCATATCTTCTTTCGCAATTGGAAAGATAAAA 424
Query 358 AAGGAAATTCAAGAGGAGAAAATGGAAGTCATTAATACCTTTAAGTTTATGAGATTTCTT 417
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 AAGGAGATTCAAGAGGATAAAATGGAAGTTATTAATACCTTTAAGTTTATGAGATTTCTT 484
Query 418 GCGGCTAAGATTATGGGAAGCCGCAAAAAGGATGAGAGCGAGGAATCAATGAAGCTAACA 477
||| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 485 GCGACTAAAATTGTGGGAAGCCGCAAAAAGGAGGAGAGCGAGGAATCAATGAAGCTAACA 544
Query 478 GCAGAACAACAAAAAGAAATCAATGAAGGAATCTTAAGATGGGAAACAATTATTGCTCGG 537
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||
Sbjct 545 GCAGAACAACAAAAAGAAATCAAAGAAGGGATCTTAAGATGGGAAACAATCATTACTCGG 604
Query 538 ATCACAAACACAATGGTAAT-GAGTACAAAAAA-T-T-CTTCTTCTAGTGAAAACTCTAC 593
|||||||||||||||||| | ||| |||| || | | ||||||| | |||| | ||||
Sbjct 605 ATCACAAACACAATGGTA-TCGAGCACAACCAACTCTGCTTCTTCCAATGAAGAGTCTAG 663
Query 594 TACGGGGAAGGAAGCTTCAAGCGGCAGCAGCAAAAAAGGAGGCTCTTCCGAAGACACTAA 653
| ||||| |||||||| |||| | |||||||| | |||| |||| | | |
Sbjct 664 TGTTGGGAAAGAAGCTTCCAGCGAAAACAGCAAAA--G----CTCTGGTAAAGAAAGTGA 717
Query 654 -AGGTGCAAACACTAACAAGGGTGGAAGTCCATCCAGCAGCCCATC-TG---GTTCAAGC 708
|| | | | |||| | || || |||| | || | || | || || |||
Sbjct 718 GAGTT-C---CGCTAA-A-GG-TGAAAGTG-AGACATCCGCTAAAGGTGAAAGT--AAGA 767
Query 709 TCTTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAACTACCGGTGGAAGCTCTACA 768
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 768 -CTTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAAGTGCTGGTGGAAGCTCTACA 826
Query 769 AGCGCTACTCAAAAGGAAAGCTCCGCTAGTGGAAATGTTGGCGCTAGTCAGAGCAGTGGT 828
||||||||| ||| | || | | || ||| |||||||||||||||||||
Sbjct 827 AGCGCTACT-AAA-G-AA-G-------A----AA--GTTC-CGCTAGTCAGAGCAGTGGT 868
Query 829 GTAACAGT-AGCACAAGTTGAGGAAGAGACTTCCAAAGATGTCTCGACATTCATAATGAA 887
|||||||| | ||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 869 GTAACAGTGA-CACAAGTCGAGGAAGAGACGTCCAAAGATGTTTCGACATTCATAATGAA 927
Query 888 CCTCGAAAAGAAATGTCCGCAAAAAGAGGAATTTAAGGTCTTCTTCGAGCAACTCAAGGG 947
|||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 928 CCTCGAAAAGAAGTGTCCACAAAAGGAGGAATACAAGGTCTTCTTCGAGCAACTCAAGGG 987
Query 948 TACAATGACTGCTCCCGCCAAAGAAAGAAAAGGTTTGTTTTCTAGGATTAAATCTGCTGC 1007
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 988 TACAATGATTGCTCCCCCCAAAGAAAGAAAAGGTTTATTTTCTAGGATTAAATCTGCTGC 1047
Query 1008 TGGGAAACTATCTGGTGCGATGGCAGTTATGCGATCTAGAATTGGAAGCAAATCAGCAGA 1067
||| |||||||| |||||||||| |||||| |||| |||||||||||||||||||| ||
Sbjct 1048 TGGTAAACTATCGGGTGCGATGGGAGTTATAAGATCAAGAATTGGAAGCAAATCAGCTGA 1107
Query 1068 GGTTAAAAAGTCTATGGAAACTTACCAAGAACAAGTGATGAAAACTCTCCAAGAGTTAGA 1127
|||||| ||| ||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 1108 GGTTAAGAAGAATATGGAAGCTTACCAAGAACAAGTGATGAAGACTCTCGAAGAGTTAGA 1167
Query 1128 TACCATTCACAGTCAAATTGTGAGTCAGAATAAAGGAAAGAAAGAAGGATCTTTGACATG 1187
|||||| || ||||||||||||||||||| |||||| ||| |||| || |||||||||||
Sbjct 1168 TACCATCCATAGTCAAATTGTGAGTCAGACTAAAGGCAAGCAAGAGGGGTCTTTGACATG 1227
Query 1188 CACACCAGCACAACAAACTCAGATTAAG-CAGACAATTACTAAGTGGGAACAAGTCACAA 1246
|||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 1228 CACACCAGAACAACAAACACAGATTAAGAC-GACAATTACTAAGTGGGAACAAGTCACAA 1286
Query 1247 CCCAATTCGTGGAGACCGCTATTCAGAGCGAGACA-AAGTCTTCGTCAACTACTTCATCT 1305
|||||||||| ||||| |||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1287 CCCAATTCGTTGAGACTGCTATTCAGAGCGAGACACAA-TCTTCTTCAACTACTTCATCT 1345
Query 1306 TCTGTCGGCAAGATGAACACAAACTGA 1332
||||||||||| |||||||||||||||
Sbjct 1346 TCTGTCGGCAAAATGAACACAAACTGA 1372
> AT3G28980.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10993190-10995002 REVERSE LENGTH=1628
Length=1628
Score = 510 bits (276), Expect = 1e-143
Identities = 400/457 (88%), Gaps = 20/457 (4%)
Strand=Plus/Plus
Query 811 GCTAGTCAGAGCAGTGGTGTAACAGTAG-CACAAGTTGAGGAAGAGACTTCCAAAGATGT 869
|||||||||||||| || ||||||| | ||||||| ||||||||||| || ||||||||
Sbjct 885 GCTAGTCAGAGCAGCAGTTTAACAGT-GACACAAGTGGAGGAAGAGACGTCAAAAGATGT 943
Query 870 CTCGACATTCATAATGAACCTCGAAAAGAAATGTCCGCAAAAAGAGGAATTTAAGGTCTT 929
||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 944 TTCGACATTCATAATGAACCTCGAAAAGAAGTGTCCACAAAAGGAGGAATTCAAGGTCTT 1003
Query 930 CTTCGAGCAACTCAAGGGTACAATGACTGCTCCCGCCAAA-GAAAGAAAAGGTTTGTTTT 988
|||||||||||| |||||||| |||| ||||||| | ||| ||||||||||||||||| |
Sbjct 1004 CTTCGAGCAACTTAAGGGTACGATGATTGCTCCC-CGAAAAGAAAGAAAAGGTTTGTTCT 1062
Query 989 CTAGGATTAAATCTGCTGCTGGGAAACTATCTGGTGCGATGGCA-GTTATGCGATCTAGA 1047
||||||||||| |||||||||||||| |||||||||| ||| || |||||| | || |||
Sbjct 1063 CTAGGATTAAAACTGCTGCTGGGAAAATATCTGGTGCCATG-CAAGTTATGAGGTCAAGA 1121
Query 1048 ATTGGAAGCAAATCAGCAGAGGTTAAA-AAGTCTATGGAAACTTACCAAGAACAAGTGAT 1106
||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||
Sbjct 1122 ATTGGAAGCAAATCAGCAGAGGT-AAAGAAGAATATGGAAGCTTACCAAGAACAAGTGAT 1180
Query 1107 GAAAACTCTCCAAGAGTTAGATACCATTCACAG-TCAAATTGTGAGTCAGAATAAAGGAA 1165
||| |||||| |||||||||||||||| ||| | |||||||||||||||||| ||||| |
Sbjct 1181 GAAGACTCTCGAAGAGTTAGATACCATCCAC-GCTCAAATTGTGAGTCAGAACAAAGGCA 1239
Query 1166 AGAAAGAAGGATCTTTGACATGCACACC-AGCACAACAAACT-CAGATTAAGCAGACAAT 1223
|| | ||||||||||||||||| | |||||||| | |||||||||||||||||
Sbjct 1240 AG---GCT---TCTTTGACATGCACACCCA-CACAACAAG-TACAGATTAAGCAGACAAT 1291
Query 1224 TACTAAGTGGGAACAAGTCACAACCCAATTCGTGGAG 1260
|| || |||||||||||||||||||||||||| |||
Sbjct 1292 CACCAAATGGGAACAAGTCACAACCCAATTCGTTGAG 1328
Score = 73.1 bits (39), Expect = 6e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 710 CTTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAACTACCG 754
|||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 838 CTTCCGCTAAAGGTGAAAGTGAGACTTCTTCTTCAAAAACTGCCG 882
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 710 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 738
|||||||||||||||||||||||||||||
Sbjct 694 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 722
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 710 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 738
|||||||||||||||||||||||||||||
Sbjct 814 CTTCCGCTAAAGGTGAAAGTGAGACTTCC 842
> AT3G28790.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10813331-10815699 REVERSE LENGTH=2184
Length=2184
Score = 91.6 bits (49), Expect = 2e-17
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 1182 GACA-TGCACACCAGCACAACAAACTCAGATTAAGCAGACAATTACTAAGTGGGAACAAG 1240
|||| || ||| || ||||||| || || ||||||||||||| || |||||||||||||
Sbjct 1767 GACAGTG-ACATCAACACAACAGACAGAGCTTAAGCAGACAATCACCAAGTGGGAACAAG 1825
Query 1241 TCACAACCCAATTCGTGGAGACCGCT 1266
|||||||||||||||| ||||| |||
Sbjct 1826 TCACAACCCAATTCGTTGAGACGGCT 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5