BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg322981

Length=870
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29050.1 | Symbols:  | receptor-like protein kinase-related ...   630    5e-180


> AT3G29050.1 | Symbols:  | receptor-like protein kinase-related 
| chr3:11039509-11040701 REVERSE LENGTH=723
Length=723

 Score =  630 bits (341),  Expect = 5e-180
 Identities = 399/427 (93%), Gaps = 3/427 (1%)
 Strand=Plus/Plus

Query  447  AGGGAAGATCAATTATGATGACAATTTCTGTATTGATACCGCAAGGGCAAGGCCGAATGC  506
            ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  297  AGGGAAGATCAATTACGATGACAATATCTGTATTGATACCGCAAGGGCAAGGCCGAATGC  356

Query  507  GAAAACTCATACCCGTGATGA---AGTTTTAGAGTTTTTGACTCTCATCGATAATCTGAC  563
            ||||||||||||| |||||||   |||||| ||||||||||  ||| |||| ||||||||
Sbjct  357  GAAAACTCATACCGGTGATGATTCAGTTTTGGAGTTTTTGAGACTCTTCGAAAATCTGAC  416

Query  564  AAATATAGCCGTCACTAAAAGAAATAATTTCGTAAAAGATGTGGAGAAACCGGCACTATA  623
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  417  AAATATAGCCGTCACTAAAAGAAATAACTTCGTAAAAGATGTGGAGAAACCGGCACTATA  476

Query  624  TGCGGCAGGAGAGAAGAGGTTCGGAAATAAGAAGATCTATGTAATGGTTCAGTGTACGAA  683
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct  477  TGCGGCAGGAGAGAAAAGGTTCGGAAATAAGAAGATCTATGTAATGGTTCAGTGTACGCA  536

Query  684  GGACTTAACTCCTAAGGCTTGTGTGGAGTGTGTGAGTCACAATGTCATAAAATTTCAAAA  743
             ||||||||||||| |||||||||||||||||||| ||| ||||||    |||||||| |
Sbjct  537  TGACTTAACTCCTAGGGCTTGTGTGGAGTGTGTGAATCATAATGTCCGGCAATTTCAAGA  596

Query  744  TTGCTATGAAAATAAACCAGTAGGTTTGAAAATAGGTGGAAGAGTTTTCGGTAGGAGCTG  803
            |||||||||| ||||||||||||||||||||| |||||  |||||||| |||||||||||
Sbjct  597  TTGCTATGAAGATAAACCAGTAGGTTTGAAAAAAGGTGCTAGAGTTTTGGGTAGGAGCTG  656

Query  804  TAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCCAAGACCAGTCCTAACTATTTGAA  863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  657  TAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCCAAGACCAGTCCTAACTATTTGAA  716

Query  864  GTTCTAA  870
            |||||||
Sbjct  717  GTTCTAA  723



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42447854215


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5