BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323006
Length=2850
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29320.1 | Symbols: | Glycosyl transferase, family 35 | chr... 2673 0.0
> AT3G29320.1 | Symbols: | Glycosyl transferase, family 35 | chr3:11252807-11257814
FORWARD LENGTH=3180
Length=3180
Score = 2673 bits (1447), Expect = 0.0
Identities = 1631/1722 (95%), Gaps = 4/1722 (0%)
Strand=Plus/Plus
Query 1133 GTCAACTGGGAAGAA-TCCCAGAGAAGGTTGCAGTGCAGATGAATGACACTCACCCTACT 1191
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GTCAACTGGGAAGAATTTCCAGAGAAGGTTGCAGTGCAGATGAATGACACTCACCCTACC 1291
Query 1192 CTATGCATTCCCGAGCTAATGAGGATTCTAATGGATTTGAAAGGACTAAGCTGGGAGGAT 1251
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1292 CTATGCATTCCTGAGCTAATGAGGATTCTAATGGATTTAAAAGGACTAAGCTGGGAAGAC 1351
Query 1252 GCTTGGAAAATTACACAAAGGACCGTGGCATACACAAACCATACAGTCTTGCCTGAGGCA 1311
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1352 GCTTGGAAAATCACACAAAGGACTGTGGCATACACAAACCATACAGTCTTGCCTGAGGCA 1411
Query 1312 CTGGAGAAGTGGAGTTTAGAACTTATGGAGAAATTGCTTCCTCGTCATGTAGAGATTATA 1371
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1412 CTGGAGAAGTGGAGTTTAGAACTCATGGAGAAATTGCTTCCTCGTCATGTGGAGATTATC 1471
Query 1372 GAAAAGATTGACGAGGAGCTAGTTCGCACAATTGTCTCTGAGTATGGCACTGCGGATCCT 1431
||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1472 GAAAAGATTGATGAGGAGCTAGTTCGCACAATTGTTTCAGAGTATGGCACCGCGGATCCT 1531
Query 1432 GACTTACTCGAAGAGAAACTGAAGGCAATGAGGATCTTAGAAAACGTTGAGTTGCCTTCT 1491
|||||||| ||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1532 GACTTACTTGAAGAAAAACTGAAGGCAATGAGGATCTTGGAAAATGTCGAGTTGCCTTCT 1591
Query 1492 GCCTTTGCAGATGTGATCGTGAAGCCGGAGAGCAAACCAGTAACTGCAAAAGATGCTCAA 1551
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 1592 GCCTTTGCAGATGTGATCGTGAAGCCGGTGAACAAACCAGTTACTGCAAAAGATGCTCAA 1651
Query 1552 AATGGCGTGAAAACGGAACAAGAAGAGGAAAAAATTGCTGGCGAGGAAGAGGAAGAGGAA 1611
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1652 AATGGCGTGAAAACGGAACAAGAAGAGGAAAAAACTGCTGGAGAGGAAGAGGAAGACGAA 1711
Query 1612 GTTATCCCAGAACC-A-A-TAAAACCACCAAAGATGGTCCGTATGGCCAACCTTGCTGTT 1668
|||||||||||||| | | || |||| || ||||||||||||||||||||||||||||||
Sbjct 1712 GTTATCCCAGAACCAACAGTAGAACCCCCCAAGATGGTCCGTATGGCCAACCTTGCTGTT 1771
Query 1669 GTGGGTGGTCATGCTGTAAATGGGGTTGCAGAGATACACAGTGAAATAGTGAAGCAGGAT 1728
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1772 GTGGGTGGTCATGCTGTAAATGGCGTTGCAGAGATACACAGTGAAATAGTGAAGCAGGAC 1831
Query 1729 GTGTTTAATGATTTCGTTCAGTTGTGGCCGGAAAAATTTCAGAATAAAACCAATGGAGTA 1788
||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1832 GTGTTTAATGATTTCGTACAGTTGTGGCCAGAAAAATTTCAGAACAAAACAAATGGAGTA 1891
Query 1789 ACACCAAGGCGATGGATTCGTTTTTGCAACCCATATCTAAGTGATACTATAACTAACTGG 1848
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1892 ACACCAAGGCGATGGATTCGTTTTTGCAACCCATATTTAAGTGATATTATAACTAACTGG 1951
Query 1849 ATAGGCACAGAAGACTGGGTCTTAAACACCGAAAAGCTTGCGGAGCTGAGAAAGTTTGCA 1908
|||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||
Sbjct 1952 ATAGGCACAGAAGACTGGGTCTTAAATACCGAAAAGGTTGCGGAACTAAGAAAGTTTGCA 2011
Query 1909 GATAATGAAGATCTTCAATCCGAGTGGAGGACAGCAAAGAAGAAGAACAAGTTAAAGGTT 1968
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 2012 GATAATGAAGATCTCCAATCTGAGTGGAGGGCAGCAAAGAAGAAGAACAAGTTGAAGGTT 2071
Query 1969 GTAGCACTTATCAAGGAAAGAACGGGATACACTGTCAGCCCGGATGCAATGTTCGACATT 2028
||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 2072 GTATCACTTATCAAGGAAAGAACTGGATATACTGTCAGCCCCGATGCAATGTTCGACATT 2131
Query 2029 CAGATCAAGCGTATCCACGAGTACAAGCGACAACTGCTTAATATCTTGGGAATTGTTTAC 2088
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2132 CAGATCAAGCGTATACATGAGTACAAGCGACAACTGCTAAATATCTTGGGAATTGTTTAC 2191
Query 2089 CGCTACAAAAAGATGAAGGAAATGAGTGCCAGTGAGAGGGAGAAGGCATATGTTCCAAGA 2148
||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||
Sbjct 2192 CGCTACAAAAAGATGAAGGAAATGAGTGCTAGTGAGAGAGAGAAAGCATTTGTTCCAAGA 2251
Query 2149 GTTTGCATATTTGGAGGAAAAGCATTCGCCACATATGTGCAAGCTAAGAGGATTGTGAAA 2208
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 2252 GTTTGCATATTTGGGGGAAAAGCATTTGCCACATATGTGCAAGCTAAGAGAATTGTTAAA 2311
Query 2209 TTCATCACAGATGTTGCATCTACAATTAACCATGATCTGGAAATAGGTGACCTGCTTAAG 2268
|| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2312 TTTATCACAGATGTTGCGTCTACAATTAACCATGATCCAGAAATAGGTGACCTCCTTAAG 2371
Query 2269 GTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCCGAACTGCTCATTCCAGCAAGTGAG 2328
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 2372 GTTATCTTTGTTCCTGATTACAATGTCAGTGTTGCTGAATTGCTCATTCCAGCAAGTGAG 2431
Query 2329 CTTTCTCAGCACATCAGTACCGCTGGGATGGAAGCTAGTGGGACAAGCAACATGAAATTT 2388
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2432 CTTTCTCAGCACATCAGTACTGCTGGGATGGAAGCTAGTGGGACAAGCAACATGAAATTT 2491
Query 2389 TCGATGAACGGTTGCGTTTTGATTGGAACCTTGGATGGGGCGAATGTCGAGATTAGAGAA 2448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2492 TCGATGAACGGTTGCGTTTTGATTGGAACCTTGGATGGGGCGAATGTCGAGATTAGAGAA 2551
Query 2449 GAAGTAGGAGAAGAAAATTTCTTCCTTTTTGGTGCCAAAGCTGATGAGATTGTGAACCTC 2508
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2552 GAAGTTGGAGAAGAAAATTTCTTCCTCTTTGGTGCCAAAGCTGATCAGATTGTGAACCTC 2611
Query 2509 AGGAAGGAGAGAGCAGAGGGAAAGTTTGTTCCAGATCCTACTTTTGAAGAAGTCAAGAAG 2568
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2612 AGGAAGGAGAGAGCAGAGGGAAAGTTTGTTCCCGATCCTACTTTTGAAGAAGTCAAGAAG 2671
Query 2569 TTCGTTAGAAGCGGTGTCTTTGGCTCAAACAGCTATGATGAACTAATTGGCTCTTTGGAA 2628
|||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2672 TTCGTTGGAAGCGGCGTCTTTGGCTCAAATAGCTATGATGAACTAATCGGCTCTTTGGAA 2731
Query 2629 GGAAATGAAGGCTTTGGTCGAGCGGATTACTTCCTCGTTGGCAAAGACTTTCCTAGTTAC 2688
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2732 GGAAACGAAGGCTTTGGACGAGCGGATTACTTCCTAGTTGGCAAAGACTTTCCTAGTTAC 2791
Query 2689 ATTGAATGTCAAGAAAAAGTCGACGAGGCATACCGGGACCAGAAAAGATGGACGAGAATG 2748
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2792 ATCGAATGCCAAGAAAAAGTCGACGAGGCATACCGAGACCAGAAAAGATGGACGAGAATG 2851
Query 2749 TCAATCTTGAACACAGCAGGTTCATTCAAGTTTAGCAGTGACCGGACGATCCATGAATAC 2808
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2852 TCAATAATGAACACAGCAGGTTCATTCAAGTTTAGCAGTGACCGGACGATCCACGAATAC 2911
Query 2809 GCCAAAGACATTTGGAATATTAAGCAAGTCGAACTTCCATGA 2850
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2912 GCCAAAGACATATGGAATATTAAGCAAGTGGAACTTCCATGA 2953
Score = 1753 bits (949), Expect = 0.0
Identities = 1075/1136 (95%), Gaps = 7/1136 (1%)
Strand=Plus/Plus
Query 1 ATGGATACGATGCGTATCTCCGGTGTATCGACCGGAGCTGAGATTTTAGTACAATGCAAT 60
|||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 65 ATGGATACGATGCGAATCTCCGGTGTATCAACCGGAGCTGAGGTTTTAATACAATGCAAT 124
Query 61 TCCTTATCTAGCCTCGTTTCTCGTCGTTGCGACGACGGAAGATTGAGAACAAGAATGTTT 120
|||||||| ||||||||||||||||||||||||||||||| || | |||| |||||||||
Sbjct 125 TCCTTATCAAGCCTCGTTTCTCGTCGTTGCGACGACGGAAAATGGCGAACGAGAATGTTT 184
Query 121 CCGGCGAGAAGCAGAAACTGGCGTCCATCGCCGACGAGAAGGTCGTTTTTATCGGTGAAA 180
|||||||||| |||| ||| ||||||||||||||||||||| || ||||| |||||||||
Sbjct 185 CCGGCGAGAAACAGAGACTTGCGTCCATCGCCGACGAGAAGATCCTTTTTGTCGGTGAAA 244
Query 181 TCTGTCTCTAGCGAACC-AAAGGCGAAAGTAACCGATGCAGTTCTCGATTCCGAACAAGA 239
||| ||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||
Sbjct 245 TCTATCTCTAGCGAACCGAAA-GCCAAAGTAACCGACGCAGTTCTCGATTCCGAACAAGA 303
Query 240 AGTG--T-TTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAGCTTCGAGTAT 296
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGTGTTTATTAGCTCGATGAATCCGTTTGCGCCAGATGCTGCTTCGGTAGCTTCGAGTAT 363
Query 297 CAAGTACCATGCTGAGTTTACGCCATTGTTTTCTCCGGAGAAGTTTGAGTTGCCAAAGGC 356
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 364 CAAGTACCACGCGGAGTTTACGCCATTGTTTTCACCGGAGAAGTTTGAGTTGCCAAAGGC 423
Query 357 GTT-TTTCGCGACTGCGCAGAGTGTTAGAGACGCTTTGATCATGAATTGGAATGCAACTT 415
||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 424 GTTCTTT-GCGACTGCGCAAAGTGTTAGAGATGCTTTGATCATGAATTGGAATGCAACTT 482
Query 416 ATGAGTATTACAATAGGGTGAATGTGAAACAGGCGTATTATTTGTCAATGGAGTTTTTGC 475
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 483 ATGAGTATTACAACAGAGTGAATGTGAAACAAGCGTATTATTTGTCAATGGAGTTTTTGC 542
Query 476 AGGGTAGAGCCTTATCGAATGCAGTGGGTAATCTTGGGCTTAATAGCGCTTATGGTGACG 535
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 543 AGGGTAGAGCCTTATCGAATGCCGTGGGTAACCTTGGGCTTAATAGCGCTTATGGTGATG 602
Query 536 CTTTGAAGAGGCTTGGTTTTGATTTGGAAAGTGTAGCTAGTCAGGAGCCAGATCCTGCAC 595
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 603 CTTTGAAGAGGCTTGGTTTTGATTTGGAAAGCGTGGCTAGTCAGGAGCCAGATCCTGCAC 662
Query 596 TTGGGAATGGTGGACTCGGGAGACTTGCTTCATGCTTTTTGGATTCCATGGCAACTTTGA 655
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 663 TTGGGAATGGTGGACTCGGGAGACTTGCCTCGTGTTTTTTGGATTCCATGGCAACTTTGA 722
Query 656 ATTATCCGGCATGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATCA 715
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 723 ATTATCCGGCTTGGGGTTATGGACTTAGATACAAGTATGGCTTGTTCAAACAGAGAATTA 782
Query 716 CAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGCTAAGTAATCCTTGGGAAA 775
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 783 CAAAAGATGGACAGGAGGAAGCTGCAGAAGATTGGCTTGAGCTAAGCAATCCTTGGGAAA 842
Query 776 TAGTCAGAAATGATGTCTCATATCCTATTAAGTTCTATGGAAAAGTGGTTTTTGGATCAG 835
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 843 TAGTCAGAAATGATGTCTCATATCCTATTAAGTTCTATGGGAAAGTGGTTTTTGGATCAG 902
Query 836 ATGGTAAGAAACGGTGGATTGGTGGAGAAGACATAGTGGCTGTTGCTTATGATGTTCCTA 895
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 903 ATGGTAAGAAACGGTGGATTGGTGGAGAAGACATTGTTGCTGTTGCTTATGATGTTCCTA 962
Query 896 TACCTGGTTATAAAACTAAGACTACTATCAATCTACGACTCTGGTCAACAAAAGCTCCAT 955
|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
Sbjct 963 TACCTGGTTATAAAACTAAGACAACTATCAATCTGCGGCTCTGGTCAACAAAAGCTCCTT 1022
Query 956 CAGAAGATTTTGATTTATCATCATATAACTCCGGGAAGCATACTGAGGCAGCAGAAGCTC 1015
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1023 CCGAAGATTTTGATTTATCTTCATATAACTCTGGGAAGCATACTGAGGCAGCAGAAGCTC 1082
Query 1016 TATTCAATGCCGAAAAGATTTGTTTCGTGCTTTACCCTGGAGATGAGTCAAATGAAGGAA 1075
||||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 1083 TATTCAACGCTGAAAAGATTTGCTTCGTGCTTTACCCCGGAGATGAGTCAACTGAAGGAA 1142
Query 1076 AGGCTCTTCGTCTGAAGCAACAGTACACTCTGTGTTCAGCCTCGCTACAAGATATC 1131
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1143 AGGCTCTTCGTCTGAAGCAACAATACACTCTGTGCTCAGCCTCGCTACAAGATATC 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141621280089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5