BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323007

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29330.2 | Symbols:  | unknown protein; INVOLVED IN: biologi...   364    5e-100
  AT3G29320.1 | Symbols:  | Glycosyl transferase, family 35 | chr...   145    6e-34 


> AT3G29330.2 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; EXPRESSED IN: stem, embryo; EXPRESSED 
DURING: D bilateral stage. | chr3:11257684-11259055 REVERSE 
LENGTH=765
Length=765

 Score =  364 bits (197),  Expect = 5e-100
 Identities = 247/271 (91%), Gaps = 3/271 (1%)
 Strand=Plus/Plus

Query  393  TTCTTCTTTGCCTGGACCAACCGTTGCAATCCCTTTAATAGGACCACAAGAAAATCCGAG  452
            ||| |||||| |||||||||||||| ||  |||||||||||||||||||||||||||| |
Sbjct  468  TTCCTCTTTGTCTGGACCAACCGTTACAGCCCCTTTAATAGGACCACAAGAAAATCCGTG  527

Query  453  TAAAAGCAAGGCTAGGAAGAAAGGTGTGGAATCAATAACAGAAGATCTAGAAACCAAGAG  512
            || ||||||||||||||||| ||||| ||| |||| |||||||||||||||| | |||||
Sbjct  528  TACAAGCAAGGCTAGGAAGAGAGGTGCGGATTCAACAACAGAAGATCTAGAATCAAAGAG  587

Query  513  ACGGAGAGTCGTGGAATGTGGGGTGTCAAATGAGTCGATTAGACTGTGTAGAATATGCAA  572
            |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct  588  ACGGAGAGTCGTGGAATGCGGGGTGTCAAATGAGTCAATTAGATTGTGTAGAATATGCAA  647

Query  573  CGTAGTTTGTAATAGCGACACGGTTTACAATGATCATTTGGCCGGTCAGAAGCACGCCGC  632
            ||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||
Sbjct  648  CGTAGTTTGTAATAGCGACATTGTTTACAACGATCATTTAGCCGGTCAGAAGCACGCCGC  707

Query  633  TAAGGCAGCGAAGACCACT-GTAAAT-ACAT  661
            ||||||||||||| || || |||||| ||||
Sbjct  708  TAAGGCAGCGAAGGCC-CTTGTAAATTACAT  737


 Score =  241 bits (130),  Expect = 8e-63
 Identities = 175/197 (89%), Gaps = 2/197 (1%)
 Strand=Plus/Plus

Query  1    ATGGATTACAACAGCCAGTGGCAACAACCGCCGGCGCCGGCAATGCAGCCACCGGAAATG  60
            |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||
Sbjct  3    ATGGATTACAACAGTCAGTGGCAACAACCGCCGGCACCGGCGATACAGCCACCGGAAATG  62

Query  61   AATCAGTCAG-CGGCGGTTGATGCGTATTACGCTTCCTATTGTGCTCACTACGCAAATCC  119
            |||||||| | |||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct  63   AATCAGTC-GACGGCGGTTGATGCGTATTACGCTTCCTATTATGGTTACTACGCAAATCC  121

Query  120  AGACCCTAATTTTAAATTTGATCTCCAAACACATGAATCATTAGCTATTGCAATTCCACC  179
            | |||||| ||  |  |  |||||||||||  ||||||| | ||||||||||||||||||
Sbjct  122  AAACCCTAGTTCCATCTCCGATCTCCAAACTTATGAATCCTCAGCTATTGCAATTCCACC  181

Query  180  AGCGCCTGGAGTTGTTG  196
            | |||||||||||||||
Sbjct  182  ACCGCCTGGAGTTGTTG  198


 Score =  119 bits (64),  Expect = 4e-26
 Identities = 125/152 (82%), Gaps = 13/152 (9%)
 Strand=Plus/Plus

Query  198  TACGACGCCGTATTACACTTTGGATACGAATGCT---CAGAACTTGGCTTGGCAAGAGTC  254
            ||||||||||||||| ||||| |||| |||||||   ||||||| ||||||||  || ||
Sbjct  245  TACGACGCCGTATTATACTTTAGATATGAATGCTCAGCAGAACTCGGCTTGGCCTGA-TC  303

Query  255  TGT-TCGA-CCTTCTCATAGCTTATACCCGCCAGGTGCGGGTTTCCCTTGGACCGGCCAC  312
            | | | || |  ||||||||| ||||||||||   |   | |||| ||||||||||||||
Sbjct  304  T-TATAGAGCAGTCTCATAGCATATACCCGCC---T---GATTTCTCTTGGACCGGCCAC  356

Query  313  ATAGTTCAAGCTCAACTTCCTGGATTGAAGAA  344
            ||||||||||||||||||||||||  ||||||
Sbjct  357  ATAGTTCAAGCTCAACTTCCTGGAACGAAGAA  388


> AT3G29320.1 | Symbols:  | Glycosyl transferase, family 35 | chr3:11252807-11257814 
FORWARD LENGTH=3180
Length=3180

 Score =  145 bits (78),  Expect = 6e-34
 Identities = 96/104 (92%), Gaps = 3/104 (3%)
 Strand=Plus/Minus

Query  560   GTAGAATATGCAACGTAGTTTGTAATAGCGACACGGTTTACAATGATCATTTGGCCGGTC  619
             |||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||||
Sbjct  3180  GTAGAATATGCAACGTAGTTTGTAATAGCGACATTGTTTACAACGATCATTTAGCCGGTC  3121

Query  620   AGAAGCACGCCGCTAAGGCAGCGAAGACCACT-GTAAAT-ACAT  661
             |||||||||||||||||||||||||| || || |||||| ||||
Sbjct  3120  AGAAGCACGCCGCTAAGGCAGCGAAGGCC-CTTGTAAATTACAT  3078



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32049385786


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5