BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323008
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29340.1 | Symbols: | zinc finger (C2H2 type) family protei... 933 0.0
> AT3G29340.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr3:11259587-11262440 REVERSE LENGTH=1953
Length=1953
Score = 933 bits (505), Expect = 0.0
Identities = 862/1023 (84%), Gaps = 69/1023 (7%)
Strand=Plus/Plus
Query 1 ATGTCTCAGAGACTTCATGTTTGCAAAAAATGTGGAAAAAAGTTTGCAACTTTAAAAGGT 60
||||||||||||||||||| |||||||| ||| || | |||||||| |||||||||||||
Sbjct 955 ATGTCTCAGAGACTTCATGGTTGCAAAACATGCGGGAGAAAGTTTGGAACTTTAAAAGGT 1014
Query 61 GTCTATGGTCATCAGAGGATCCATTCTGGTAATTACAATAGAATCGAAGATGATAATGGT 120
|| |||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 1015 GTGTATGGTCACCAGAGGATGCATTCTGGTAATCACAATAGAATCGAAGATGAGAATGGT 1074
Query 121 TTGCAAAAGATTTGGGGTCTT---AAGAAGTCTAGGGTTTGCTCTGTTTCAGCTTCTGAT 177
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1075 TTGGAAAGGATTTGGGGTCTTAAGAAGAAGTCTAGGGTTTGCTCTGTTTCAGCTTTTGAT 1134
Query 178 CGATTCAAAGGATCTTCTTTTATGACTGAGATTAAGAAACATGAGGTGATTGAAGCTGCA 237
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1135 CGATTCAAAGGATCTTCTTTTATGGCTGAGATTGAGAAACATGAGGTGATTGAAGCTGCA 1194
Query 238 ATGAACTTGGTTATGTTGTCT-AGACGAGTTTATGACTTTGCTTCTATCAGAAATTTGCC 296
|||||||||||||||||| | | | ||||||||||||||||||||||||| ||||||||
Sbjct 1195 TTGAACTTGGTTATGTTGTGTCA-AGGAGTTTATGACTTTGCTTCTATCAGTAATTTGCC 1253
Query 297 TCTGGGTGTTGATTTCATGGATTTAGAGCTTAAACCTAGTCCTTTGAGAAGTAAATTGCA 356
||| |||| || ||||||||||||||||||||||||| ||||||||||||| ||| | ||
Sbjct 1254 TCTAGGTGATGGTTTCATGGATTTAGAGCTTAAACCTTGTCCTTTGAGAAGGAAACTACA 1313
Query 357 GaaaaaaaCTCAG-TCTACCTATAAATGTC-GTATATGTGACAAGAGTTTTGTGTGTTCT 414
||||||| ||| | || | |||||||| | |||||||||| ||||||||||||||||||
Sbjct 1314 GAAAAAATCTC-GCTCCAGTTATAAATG-CAGTATATGTGAGAAGAGTTTTGTGTGTTCT 1371
Query 415 CAAGCTCTTGGTAGCCACCAAAGACTTCACAGATCGATGAA--AGGGCATTTAG-TGCGT 471
|||||||||||||| ||||| ||||||||||||| || || || || | | || ||
Sbjct 1372 CAAGCTCTTGGTAGTCACCAGAGACTTCACAGATGGA--AACTAGTGCCTAAACCTGAGT 1429
Query 472 A-A---AAGG-GA--GTACATTG--AGGA-TGAT-A-AAGCTAAGAACATTGTTACACAA 519
| | ||| || || || || || | | || | |||||||||| |||||| || ||
Sbjct 1430 ACATTGAAGATGATAGTTCACTGTTAG-ACTCATCAGAAGCTAAGAAGATTGTTTCAAAA 1488
Query 520 CGATCAAGCTTTGAACTTTCTCAAAAGGAGAAGATCTTACAACGTGTTGAGCCGAAACTA 579
| |||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1489 CCATCAAGCTTTGAACATGCTCAGGAGGAGAAGATCTTACAATGTGTTGAGCCGAAACTA 1548
Query 580 GAGTTCCACGAACGGCTTACTCACTCTGGTTTCGACAAATCT-AGTACTTGTAGTAAAGC 638
||||||||||||| |||| ||||||| ||||||||||| | | | |||||| ||||||
Sbjct 1549 GAGTTCCACGAACAGCTTGCTCACTCGGGTTTCGACAAGTTTGA-TACTTGCAGTAAAAT 1607
Query 639 CAATTTCAGTGCATTCCCTTCTCCTCTAAAAGCTAAGAAGATTGTTTCACAACCATCAAA 698
|| ||||||||||| |||||||||| | |||||||||||||||||||||||||| |||
Sbjct 1608 CAGGTTCAGTGCATTACCTTCTCCTCCAGAAGCTAAGAAGATTGTTTCACAACCACCAAG 1667
Query 699 CTTTGAAGTCTCCGTGGACGAAAAGTTCTTACATCGTTTTGAGC-AGAAACTAGACTTCA 757
|||||||||||| ||||| |||||| ||||| ||||| ||||| | |||||| ||||||
Sbjct 1668 CTTTGAAGTCTCTGTGGATGAAAAGATCTTATATCGTGCTGAGCCA-AAACTAAACTTCA 1726
Query 758 GCAAACAACTTGCTCACTCGGGTTTCGACAATTCTAGTAGTTGCAGAAAAACCAACTATA 817
|| ||| |||||||||||| ||||||||||||||||||| | ||||
Sbjct 1727 GCGAACCGCTTGCTCACTCGTGTTTCGACAATTCTAGTAG---C------------TATA 1771
Query 818 GATTCAAAATATGTGGCAAGAGTTTTGTGTGTTCTCAAGC-TCAAGGTGGTCACCAAAAA 876
|| || ||||||||||||||||||||||||||| ||||| | | ||||||||||||| |
Sbjct 1772 GAAGCATAATATGTGGCAAGAGTTTTGTGTGTTCACAAGCATTA-GGTGGTCACCAAACA 1830
Query 877 CTTCACAGATC--TGAA-G---A-T--G-G--TA---A---T--TCATTCTCTGGC-GTG 915
||||||||||| | || | | | | | || | | | |||| || | |||
Sbjct 1831 CTTCACAGATCGATTAAAGGCCAATTAGCGGGTACTGAAGATGGTAATTCACTCTCTGTG 1890
Query 916 ACTGACTCAGAAGCTAGCAAGATTGTTTCACAACCATCAAGCTACAAGTCTCAGGGGATA 975
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1891 ACTGACTCAGAAGCTAGCAAGATTGTTGCACAACCATCAAGCTACAAGTCTCAGGGGATA 1950
Query 976 TAA 978
|||
Sbjct 1951 TAA 1953
Score = 99.0 bits (53), Expect = 8e-20
Identities = 95/115 (83%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 668 AAGCTAAGAAGATTGTTTCACAACCATCAAACTTTGAAGTCTC-CGTGGACGAAAAGTTC 726
|||||||||||||||||||||||||||||| |||| ||||||| | ||| || ||||||
Sbjct 422 AAGCTAAGAAGATTGTTTCACAACCATCAAGCTTTAAAGTCTCTC-AGGAGGAGAAGTTC 480
Query 727 TTACATCGTTTTGAG-CAGAAACTAGACTTCAGCAAACAACTTGCTCACTCGGGT 780
|||||| || | ||| | |||| ||||||||| ||| ||| |||| ||||||
Sbjct 481 TTACATTGTGTGGAGTTA-AAACAAGACTTCAGTGAACCGCTTTCTCATTCGGGT 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5