BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323014
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29380.1 | Symbols: | Cyclin-like family protein | chr3:112... 1375 0.0
> AT3G29380.1 | Symbols: | Cyclin-like family protein | chr3:11282407-11283524
REVERSE LENGTH=1011
Length=1011
Score = 1375 bits (744), Expect = 0.0
Identities = 926/1015 (91%), Gaps = 8/1015 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAGACTTGCTTGGACTGCAAGAGACCGACCATAACGGTGATTGATCATAGT 60
||||| |||||||| |||||||||||||||||||| ||||||| |||| ||||||| |||
Sbjct 1 ATGGAAGAAGAGACCTGCTTGGACTGCAAGAGACCAACCATAATGGTGGTTGATCACAGT 60
Query 61 AGCGGCGACACCATCTGCTCAGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCGGTGACACCATCTGTTCGGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
Query 121 TCTGAGGAATGGAGAACTTTCGCCTCCGACGACAATCGCAGTGACCGAGACCCAAACCGT 180
||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 121 TCTCAGGAATGGAGAACTTTCGCATCCGACGACAATCACAGTGACAGAGACCCAAACCGT 180
Query 181 GTTGGTGCTCCAACGAACCCTCTTCTCAAATCCGGCAATCTCGTTACCGTCATCGAGAAA 240
||||||||| | || |||||| |||||||||| ||| |||| || ||| |||||||||||
Sbjct 181 GTTGGTGCTGCGACAAACCCTTTTCTCAAATCAGGCGATCTTGTCACCATCATCGAGAAA 240
Query 241 CCTAAAGAAAACGTTTCCTCTGTTGTGTCCAAAGATGACATCTCCACTTTGTGCCGTACA 300
|||||||||| || |||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 241 CCTAAAGAAACCGCTTCCTCTGTTCTGTCCAAAGATGACATCTCCACTTTGTTCCGTGCA 300
Query 301 CAGAATCAAGTCAAGAATCATGAAGAAGATCTAATCAAGAAAGCTTTCGAGGAAATACAG 360
|| |||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||
Sbjct 301 CATAATCAAGTCAAGAACCATGAAGAAGACCTAATCAAGCAAGCCTTCGAAGAAATACAG 360
Query 361 AGAATGACTGATGCACTATACCTAAATATCGCT-GTAAACTCTAGGGCTTGTGAGATTGT 419
|||||||| ||||||||| ||||| |||||| | | |||||||||||||||||||||||
Sbjct 361 AGAATGACCGATGCACTAGACCTAGATATCG-TAATCAACTCTAGGGCTTGTGAGATTGT 419
Query 420 CTCCAAAT-TCGGTGGTCACGCTAACACGAAATTACGCAGAGGGAAGAAGCTATACGCTG 478
|||||||| | | ||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 420 CTCCAAATAT-GATGGTCACGCTAACACCAAATTACGTAGAGGGAAGAAGCTAAACGCTA 478
Query 479 TTTGTGCAGCCTCTGTTTCAATGGCTTGTCGTGAACTGAAACTGTCGAGGACATTGAAAG 538
| ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct 479 TATGTGCAGCCTCTGTTTCAACGGCTTGTCGTGAACTGCAACTCTCGAGGACATTGAAAG 538
Query 539 AGATCGCT-ATGGTTGCCAACGGTGTTGA-ATTGAAGGATATCCGCAAATCGAGTATGGT 596
|||||||| | ||||||||| ||||| || | |||||||||||| ||| |||| ||||
Sbjct 539 AGATCGCTGA-GGTTGCCAATGGTGTGGACA-AGAAGGATATCCGGAAAGAGAGTCTGGT 596
Query 597 GATAAAGCGTGTTCTTGAATCAGATCAAGCCTCCGTGTCTGCTGCTCAAGCGATTATCAA 656
|||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 597 GATAAAGCGTGTTCTTGAGTCACATCAAACCTCCGTGTCTGCTTCTCAAGCGATTATCAA 656
Query 657 CACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAAT 716
Query 717 GGCGATTCGAGAAGCTGTCGAAAAAGCTGAGAATTTCGATATCCGAAGAAACCCTAAGTC 776
|||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 717 GGCGATTCCAGAAGCGGTTGAGAAAGCAGAGAATTTCGATATCCGGAGAAACCCTAAGTC 776
Query 777 AGTTCTTGCGGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAGACCTAT 836
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 AGTTCTTGCAGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAAACCTAT 836
Query 837 TCGAGAAATTGGGATCGTTGCGGAAGTAGTGGAGAATACAATCAAGAACTCGGTTAAAGA 896
| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 837 TAGAGAAATTGGCATCGTTGCGGAAGTTGTGGAGAATACGATCAAGAACTCGGTTAAAGA 896
Query 897 TATGTACCCTTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAAGCAGAGATTAT 956
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 897 TATGTACCCGTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATCAT 956
Query 957 CAAGAGGTTAGATGGTGTCATAACTTCTTGGGATTCAGCAAAAAATTCAGTATAA 1011
||| ||||||||||||||||| || || |||||||| |||||| ||||||||||
Sbjct 957 CAAAAGGTTAGATGGTGTCATCACGTCCTGGGATTCTGCAAAATTTTCAGTATAA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5