BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323016
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29380.1 | Symbols: | Cyclin-like family protein | chr3:112... 1363 0.0
> AT3G29380.1 | Symbols: | Cyclin-like family protein | chr3:11282407-11283524
REVERSE LENGTH=1011
Length=1011
Score = 1363 bits (738), Expect = 0.0
Identities = 925/1016 (91%), Gaps = 10/1016 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAGACTTGCTTGGACTGCAAGAGACCGACCATAACGGTGATTGATCACAGT 60
||||| |||||||| |||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 1 ATGGAAGAAGAGACCTGCTTGGACTGCAAGAGACCAACCATAATGGTGGTTGATCACAGT 60
Query 61 AGCGGCGACACCATCTGCTCAGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCGGTGACACCATCTGTTCGGAGTGTGGCCTTGTCCTCGAAGCTCACATCATCGAATAC 120
Query 121 TCTGAGGAATGGAGAACTTTCGCCTCCGACGACAATCGCAGTGACAGAGACCCAAACCGT 180
||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 121 TCTCAGGAATGGAGAACTTTCGCATCCGACGACAATCACAGTGACAGAGACCCAAACCGT 180
Query 181 GTTGGTGCTCCAACGAACCCTCTTCTCAAATCCGGTGATCTCGTCACCGTCATCGAGAAA 240
||||||||| | || |||||| |||||||||| || ||||| |||||| |||||||||||
Sbjct 181 GTTGGTGCTGCGACAAACCCTTTTCTCAAATCAGGCGATCTTGTCACCATCATCGAGAAA 240
Query 241 CCTAAGGAAAACATTTCTTCTGTTGTGTCCAAAGATGATC-TCTCTACTTTGTGCCGTGC 299
||||| |||| | ||| |||||| ||||||||||||| | |||| ||||||| ||||||
Sbjct 241 CCTAAAGAAACCGCTTCCTCTGTTCTGTCCAAAGATGA-CATCTCCACTTTGTTCCGTGC 299
Query 300 GCAGAATCAACTCAAGAACCATGAAGAAGATCTAATCAAGAAAGCATTCGAGGAAATACA 359
|| |||||| ||||||||||||||||||| ||||||||| |||| ||||| ||||||||
Sbjct 300 ACATAATCAAGTCAAGAACCATGAAGAAGACCTAATCAAGCAAGCCTTCGAAGAAATACA 359
Query 360 GAGAATAACTGATGCACTATACCTAGATATCGTTGTAC-ACTCTAGGGCTTGTGAGATTG 418
|||||| || ||||||||| ||||||||||||| | | |||||||||||||||||||||
Sbjct 360 GAGAATGACCGATGCACTAGACCTAGATATCGTAAT-CAACTCTAGGGCTTGTGAGATTG 418
Query 419 TCTCCAAAT-TCGGTGGTCACGCTAACACGAAATTACGCAGAGGGAAGACGCTATACGCT 477
||||||||| | | ||||||||||||||| |||||||| |||||||||| |||| |||||
Sbjct 419 TCTCCAAATAT-GATGGTCACGCTAACACCAAATTACGTAGAGGGAAGAAGCTAAACGCT 477
Query 478 GTTTGTGCAGCCTCTGTTTCAATGGCTTGTCGTGAACTGAAACTGTCGAGGACATTGAAA 537
| ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct 478 ATATGTGCAGCCTCTGTTTCAACGGCTTGTCGTGAACTGCAACTCTCGAGGACATTGAAA 537
Query 538 GAGATCGCT-ATGGTTGCCAACGGTGTTGA-ATTGAAGGATATCCGCAAATCGAGTATGG 595
||||||||| | ||||||||| ||||| || | |||||||||||| ||| |||| |||
Sbjct 538 GAGATCGCTGA-GGTTGCCAATGGTGTGGACA-AGAAGGATATCCGGAAAGAGAGTCTGG 595
Query 596 TGATAAAGCGTGTTCTTGAATCAGATCAAGCCTCCGTGTCTGCTGCTCAAGCGATTATCA 655
||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||
Sbjct 596 TGATAAAGCGTGTTCTTGAGTCACATCAAACCTCCGTGTCTGCTTCTCAAGCGATTATCA 655
Query 656 ACACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACACCGGAGAACTCGTTCGCCGGTTCTGTTCCAAACTTGATATAAGTCAAAGAGAGATAA 715
Query 716 TGGCGATTCGAGAAGCTGTCGAAAAAGCTGAGAATTTCGATATCCGAAGAAACCCTAAGT 775
||||||||| |||||| || || ||||| ||||||||||||||||| |||||||||||||
Sbjct 716 TGGCGATTCCAGAAGCGGTTGAGAAAGCAGAGAATTTCGATATCCGGAGAAACCCTAAGT 775
Query 776 CAGTTCTTGCGGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAGACCTA 835
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 CAGTTCTTGCAGCAATTATCTTCATGATCTCTCATATATCTCAGACCAACAGGAAACCTA 835
Query 836 TTCGAGAAATTGGAATCGTTGCGGAAGTCGTGGAGAATACAATCAAGAACTCGGTTAAAG 895
|| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 836 TTAGAGAAATTGGCATCGTTGCGGAAGTTGTGGAGAATACGATCAAGAACTCGGTTAAAG 895
Query 896 ATATGTACCCTTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATTA 955
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 ATATGTACCCGTACGCCTTGAAGATTATACCTAACTGGTATGCTTGTGAATCAGACATCA 955
Query 956 TCAAGAGATTAGATGGTGTCATAACTTCTTGGGATTCTGCAAAAATTACAGTATAA 1011
|||| || |||||||||||||| || || ||||||||||||||| || ||||||||
Sbjct 956 TCAAAAGGTTAGATGGTGTCATCACGTCCTGGGATTCTGCAAAATTTTCAGTATAA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5