BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323026
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29970.1 | Symbols: | B12D protein | chr3:11745211-11746570... 438 1e-122
> AT3G29970.1 | Symbols: | B12D protein | chr3:11745211-11746570
FORWARD LENGTH=441
Length=441
Score = 438 bits (237), Expect = 1e-122
Identities = 255/264 (97%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 1 ATGGGGCGTTGGGTGAGACCTGAGGTATACCCTCTTCTTGGAGCAATGGGATTTGTGACA 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 89 ATGGGGCGTTGGGTGAGACCTGAGGTGTACCCTCTTCTTGGAGCAATGGGATTTGTGACA 148
Query 61 ACTATGGTTGTGTTCCAACTCACAAGAAACGCATTGTTAAACCCTGACTGCAGAATAAAT 120
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 149 TCTATGGTTGTGTTTCAACTCACAAGAAATGCATTCTTAAACCCTGACTGCAGAATAAAT 208
Query 121 AAAGAGCATAGAAAAATGGGAATTCTTGAAAACGAAGACGAAGGAGAAAAATATGCACAA 180
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 209 AAAGAGCATAGAAAAATGGGAATTCTAGAAAATAAAGACGAAGGAGAAAAATATGCACAA 268
Query 181 CACAATTTTCGCAAGTATCTAAGGACCCGTCAACCTCAAGTGATGCCTTCACTCAACCGT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 269 CACAATTTTCGCAAGTATCTAAGGACCCGTCAACCTCAAGTTATGCCTTCACTCAACCGT 328
Query 241 TTCTTCTCTCAAGAGGACAACTAA 264
||||||||||||||||||||||||
Sbjct 329 TTCTTCTCTCAAGAGGACAACTAA 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5