BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323027
Length=2934
Score E
Sequences producing significant alignments: (Bits) Value
AT2G10440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1977 0.0
AT3G30120.1 | Symbols: | pseudogene, similar to CTV.22, blastp... 939 0.0
> AT2G10440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15780.1);
Has 8319 Blast hits to 5104 proteins in 317 species: Archae
- 0; Bacteria - 285; Metazoa - 1706; Fungi - 535; Plants -
320; Viruses - 18; Other Eukaryotes - 5455 (source: NCBI BLink).
| chr2:4013752-4018046 REVERSE LENGTH=2808
Length=2808
Score = 1977 bits (1070), Expect = 0.0
Identities = 1644/1908 (86%), Gaps = 92/1908 (5%)
Strand=Plus/Plus
Query 733 CAAAATATGCCTCGAGGTCAACAAGTAGGACAATCTCAACCAATGATGTCACAACAATAC 792
|||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CAAAGTATGACTAGAGGTCAACAAGTAGGACAATCTCAACCAATGATGTCACAACAATAC 684
Query 793 CGAGC-GCAACATCCCATGCAGCA-GCTGCCTCAGAATAGAAGCTCACAGCAACATTTTG 850
||| | ||| | ||||||||||| | | |||||||| |||| || |||| ||||||| |
Sbjct 685 CGA-CAACAATACCCCATGCAGCAGGAT-CCTCAGAACAGAAACTTACAGAAACATTTGG 742
Query 851 ATTCTGTACAGAACAATACCAATCGGTTTCAAGAAGGAAGTTCGTTGCGCCAAACCCAAA 910
||| |||||| ||||||||||||| ||||||| || |||||||||||||||||| ||||
Sbjct 743 ATTTTGTACAAAACAATACCAATCAATTTCAAGCAGCAAGTTCGTTGCGCCAAACACAAA 802
Query 911 ACTTAACAGACCAACAGAACCAGCAACATCAATTACAGAGAGC--A-CC-TCT-GGC--- 962
|| ||||||| ||||||||||||| ||| |||||| ||||||| | || ||| |
Sbjct 803 ACATAACAGATCAACAGAACCAGCCACAACAATTAGAGAGAGCAAATCCATCTATTCTAA 862
Query 963 --A--AAT-CCA-TCTA-CATCTCAAGATTCTACAGGAAAGACGGTAAATGCCAATGCCG 1015
| ||| || | || |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 863 TAATGAATATCATTGTAGCATCTCAAGATTCTACGGGAAAGACGGTAAATGTCAATGCCG 922
Query 1016 GGGACTGGCAGGAGGAGACTTATCAGAAGATAAAACACCTGAAAGAGATGTATTTACCTG 1075
| |||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||
Sbjct 923 GAAACTGGCAGGAGGAGACCTATCAGAAGATAAAAAAACTGAAAGAGATGTGTTTACCTG 982
Query 1076 TTCTGAGTCTAATGCTCCAAAGAGTTAAGGAAAAATTGCGGCAGGTTGAATCTCTTCCGC 1135
|||| ||| |||||| |||||||||| ||||||||||||| || ||||||||||||||
Sbjct 983 TTCTCAGTTTAATGCACCAAAGAGTTGCGGAAAAATTGCGGGAGACTGAATCTCTTCCGC 1042
Query 1136 CACAGA-AGTTGCAATCTCAGTCAATTGAAAAGCTAAAGGCGGGAAAATCGTCAATCGAA 1194
| || | | ||||| |||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 1043 CGCA-ACCGATGCAAGCTCAGTGGATTGAAAAGCTAAAGGCGGGAAAATTGTCAATGGAA 1101
Query 1195 CAACTTATATTTTTCTTAAATGTTCATAAGAGCACTGTATCAGAGAAGCATAGAGACAAG 1254
|| ||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 1102 CACCTTATGTTTTTCTTAAATGTTCATAGGAGCAGTGTATCAGAGAAACATAGAGACAAG 1161
Query 1255 TTTAGTCTATTTGAGAACCACATATTGAAGTTTACCAAGAGCCAGACCATGGTTCCGAGG 1314
||||||| || |||| ||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 1162 TTTAGTCAATATGAGTACCACATATTGAAATTTACCAAGAGTCAGACCATGGTTTTGAGG 1221
Query 1315 CCAACGCAGCAGCAACAAGGGCAATTTCCTCCTTCTCAGAGCCACCAAACGGCATTGCAA 1374
||||||||||| |||||||| ||||||||||||||||| | | | | ||| |||||
Sbjct 1222 CCAACGCAGCAACAACAAGGACAATTTCCTCCTTCTCA-A---A-C--A--GCAATGCAA 1272
Query 1375 TCCCAAAGTCCTCAAGTCCATGTGTCGCAGTCTCTTGAT-AGTGATCAAATGAGCTCGCG 1433
||||||||||||||||||||||||| ||||||||| || || || |||| ||| || ||
Sbjct 1273 ACCCAAAGTCCTCAAGTCCATGTGTCACAGTCTCTTTATAAG-GAGCAAAGGAGATCACG 1331
Query 1434 GCTGATGCCAATTAGCCAAAATGCGGCCTCGTCTTCGATAATGCCTCACTCGTTGCAGAC 1493
| ||||||||| ||||||||||| ||||||| || | | | |||||| |
Sbjct 1332 GTTGATGCCAAGTAGCCAAAATGAGGCCTCG---TC-----T---T---T-GTTGCAAAT 1376
Query 1494 AAGGCCTAAGCTGGAACCAAGAGATGAGAACAACATTATGGCTTCTTCAGGAAGTGTCAT 1553
|||||||||| |||| |||||||| ||||||| |||||||||||| ||||||| ||||||
Sbjct 1377 AAGGCCTAAGTTGGATCCAAGAGACGAGAACATCATTATGGCTTCCTCAGGAAATGTCAT 1436
Query 1554 GTTACCTTCTGGTAAACAGAATCAGCAGGCCGTACAA-TCAAATATCAGTTTGGTTCAGT 1612
||||||||||| |||||| |||| | ||||||| || |||||||||||| ||||||||
Sbjct 1437 GTTACCTTCTGTTAAACAAAATCCTCGGGCCGTA-AACACAAATATCAGTTCGGTTCAGT 1495
Query 1613 CGTTGCAGCAGCAGAAGCAATTCCATCATCGCCAAATGCAACCACAACAACAGTTACAAC 1672
|||||||| ||||||||| ||||||||| || |||||| ||||| |||||
Sbjct 1496 CGTTGCAGAAGCAGAAGCGATTCCATCACCGACAAATG---------CAACA---ACAAC 1543
Query 1673 AACCACAACTAGCGAATCAGCAGCATCAAATACCGACATCACAACAGACAAATGAGATGA 1732
||||||||| || |||||| || |||||||| | ||||||||||||||||
Sbjct 1544 AACCACAACAAGGGAATCATCAACATCAAAT---G---------CAGACAAATGAGATGA 1591
Query 1733 ATGATGTTAGGATGAGGCAGAGGGTCAACATTAAAGCCGGGTTGCTTCAGCAACAAGTCT 1792
||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1592 ATGATGTGAGGATGAGGGAGAGGGTCAACATTAAAGCCAGGTTGCTTGAGCAACAAGTCT 1651
Query 1793 CATCGAGTCAGCGCCAGGTTCCAAAGCCACAGTCTAACGTTTCATCCCCTCAGATACATC 1852
||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1652 CATCGAGTCAGCGCCAGGTTCCAAAGCAAGAGTCTAACGTTTCATCCTCTCAGATACAGA 1711
Query 1853 ACCACTCTTCTCCTCAGTTAGTTGACCAGCAGATTCTTCCTGCG--G-TTAACAAAACCA 1909
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1712 ACCACTCTTCTCCTCAGTTAGTTGACCAGCATATTCTTCCTGCGACGATTAACAAAACCG 1771
Query 1910 AAACTCCATTGATGTCTGGTGGCTCGCCTTTTGTTGCTCCA--TC--TC-CGA-TTCCCG 1963
||| ||||||| ||| |||| ||| |||||||||||||| || || | | |||| |
Sbjct 1772 GAACCCCATTGAACTCTAGTGGTTCGGCTTTTGTTGCTCCAGCTCCATCTCCAGTTCCTG 1831
Query 1964 GGGATCCTGAAATGCCTATTTCTGTTGAGTCTCCAGTTTCTGGTGTTGA--AA-TAAAAT 2020
| ||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |
Sbjct 1832 GAGATTCTGAAATGCCTATATCTGTTGAGTCTCCAGTTTCTGGTGTTGATGAAATAAACT 1891
Query 2021 CAACTTTAGATTCTTCTTCTAAACTTGGCACAGAGGAA-CATCCTCCGTTATCTGTTCCT 2079
||||||||||||||||| ||||||||||||| | ||| | ||||| ||||| |||||||
Sbjct 1892 CAACTTTAGATTCTTCTAGTAAACTTGGCACACAAGAAAC-TCCTCTGTTATTTGTTCCT 1950
Query 2080 CC-C--GAGCCAATCACGGAGCGGCCTATTGATCGACTGATAAAAGCGTTTCAAGCAGCA 2136
|| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1951 CCGCCCGAGCCAATCACAGAGCGGCCTATTGATCGACTTATAAAAGCGTTTCAAGCAGCA 2010
Query 2137 TCACCAAAATCCTTGGCAGAATCTGTAAGTGAGATTAGCGCGGTCATCAGTATGGTTGAC 2196
||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 2011 TCACCAAAATCATTGGCAGAATCTGTAAGTGAGATTAGCTCGGTGATTAGTATGGTTGAC 2070
Query 2197 AGGTTTGCAGGATCATTCCATTCCGGTGGAGGATC-ACGAGCTGGTTTAGGCGAAGATTT 2255
| | ||| |||||| |||| ||| |||||||||| | |||||||||||||||| |||||
Sbjct 2071 ATGATTGGAGGATCGTTCCCTTCTAGTGGAGGATCTA-GAGCTGGTTTAGGCGAGGATTT 2129
Query 2256 GAGTGAGAGGACAAGAAACTTTTCGACACACGAAGAAACAAATCCGTCTAAAAGAATGAA 2315
|||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||
Sbjct 2130 GAGTGAGAGGACAAGAAACTTTACCACACACGAAGAAACAAATCTGTCTAAGAGAATGAA 2189
Query 2316 GCGCTCAGTCAGCATTGTGCCGCGGGATATGTCATCACAAATTGATAGTTATGAACAGTT 2375
||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2190 GCGATCAATCAACATTGTGCCGCCAGATATGTCATCACAAATTGATAGTTATGAACAGTT 2249
Query 2376 CAGTAGCCTTGAATCTGAAGTCGATTCCACAGCGTCATCTGGCTCAAAAGTTAACAATAT 2435
|||||||||||||||||||| | ||||||| | |||||||||| ||||||||||||||
Sbjct 2250 GAGTAGCCTTGAATCTGAAGTTGTTTCCACAACATCATCTGGCTTGAAAGTTAACAATAT 2309
Query 2436 TGCGCCTGGTTGTGCCCTTTTGCAAGAAATCAAAGAAACAAACGGGAGACTTATAGAGAC 2495
||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2310 TGCGCCTGGTTATGCCCTTTTGCAAGAAATCAAAGAAACAAATGGGAGACTTGTAGAGAC 2369
Query 2496 AGTGGTAGAGATATGCGATGAAGATGCTACAGGAACAATCGTGACGTGTACTTATGCTCC 2555
||||||||||||||| ||||||||| || |||||||||||| || ||||||||||||||
Sbjct 2370 AGTGGTAGAGATATGTGATGAAGATTCTTTAGGAACAATCGTCACTTGTACTTATGCTCC 2429
Query 2556 TGTGGCTCTCAGTGCTACCTTCAAAGATCATTACAAGTCAGGAAAAAT 2603
||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 2430 TGTGGCTCTCAGTGCCACATTCAAAGATCATTACAAGTCTGGAAAAAT 2477
Score = 418 bits (226), Expect = 2e-115
Identities = 363/425 (85%), Gaps = 26/425 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGGAAATACTAACTGGAAGCCTAATGAACAAGGCGGAGAC--TCC-GCTGCGAAT 57
|||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 1 ATGGAGGGAAATACTAACTGGAAGCCTAATGAACAAGGCGGAAACCGTGATGCTGCGAAT 60
Query 58 AAT-GCTATTGATTGGAGATCACAACATGAGCCTGAATTACGGAAAAAGGTTCTTTCAAA 116
||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 AATCG-TATTGATTGGAGATCACAACATGAGCCTGAATTACGGCAAAAGGTTCTTTCAAA 119
Query 117 AATAGTGGAAAAGTTGAAGGAATA-TTGTCCTACGCATGAAGAATATAAGATTATA-GAC 174
|||||| |||||||| |||||| | || || | | ||||||||||||||||||| | |||
Sbjct 120 AATAGTTGAAAAGTTCAAGGAAAAGTT-TCATGCACATGAAGAATATAAGATTA-ACGAC 177
Query 175 ATTGCTTCCAAATTTGAGGAGAAGTTTTATAGCATAGCCAAC-GATAAGACTCCAACAAG 233
|| |||||||||||||| || || |||||||||||||| ||| ||||||||| |||| ||
Sbjct 178 ATCGCTTCCAAATTTGAAGAAAATTTTTATAGCATAGC-AACCGATAAGACTACAACGAG 236
Query 234 CCAACAATGGTTACCA-CAAAACACCCAGAGCAATCTCAACATTCCTGGGTCTTCTGGTT 292
|||||||||||||| | |||||||| |||||||||||| | || || |||| ||
Sbjct 237 CCAACAATGGTTAC-AGCAAAACACACAGAGCAATCTC----TG--TG--TCATCTGCTT 287
Query 293 TGCCAAGTCAGGCCCCTATAACCGTTTCAGGCGCTCAAA-ACC-A-ACAAGTTCAGCCAC 349
|||||||||||| ||||||||||||| | || |||||| || | ||| | || | |||
Sbjct 288 TGCCAAGTCAGGTCCCTATAACCGTTCCCGGTTCTCAAAGACAGATACATGCTCGGTCAC 347
Query 350 CGCAGCAGCAGCATCATCCGCAAAGTCTGTTAAAACAACCTATTCAGCAGTCCTTC-CCT 408
|||||| ||| ||||||||||||||| |||| |||||||||||||| ||| |||| |||
Sbjct 348 CGCAGCCGCAACATCATCCGCAAAGTTTGTTGAAACAACCTATTCAACAG-CCTTTTCCT 406
Query 409 CAATC 413
|||||
Sbjct 407 CAATC 411
Score = 324 bits (175), Expect = 4e-87
Identities = 200/212 (94%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 2724 TGTACACAAGTATGAGGATCTATCGGCGAGAACCAGATCAAGGTTCAGTTTGTCCATGAC 2783
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2598 TGTACACAAGTATGAGGATCTATCCGCGAGAACCAGATCAAGGTTCAGTTTGTCCATGAA 2657
Query 2784 GGAACTTTCAGAACCAGGG-TCACTGAAAGAAATAGCTAAAACGTGGAATGATTGTGCGA 2842
|||| |||||||||||||| | | ||||| ||||||| |||||||||||||||||||||
Sbjct 2658 GGAATTTTCAGAACCAGGGTTTTC-GAAAGGAATAGCTCAAACGTGGAATGATTGTGCGA 2716
Query 2843 GAGCGACAATGGTTGAGTACGCAGAGCGACATGGTGGAGGCACTTTCAGCTCCAAGTACG 2902
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2717 GAGCGACAATGGTTGAGTACGCAGAGAGACATGGTGGAGGCACTTTCAGCTCCAAGTATG 2776
Query 2903 GTGCTTGGGAAACTGTTCTAAGAGCTTCATGA 2934
||||||||||||| ||||||||||||||||||
Sbjct 2777 GTGCTTGGGAAACGGTTCTAAGAGCTTCATGA 2808
Score = 111 bits (60), Expect = 3e-23
Identities = 113/136 (83%), Gaps = 14/136 (10%)
Strand=Plus/Plus
Query 537 GGAACAGAAACGACAAGAACAAGAGCAACTCATTAGTCAACTGATGAATGTTAAGCAGAA 596
||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 462 GGAACAGAAACGACAAGAACAAGAGCAACTCATTAATCAACTGACGAAT------C---- 511
Query 597 TCATCCAACATCACGACAAAACAACGGAG-CGCAACAAGGATCTTTTCGGGTATCATCGT 655
| |||||||||||||| |||||| ||| | ||||||||| |||||| |||||| ||||
Sbjct 512 T--TCCAACATCACGACCAAACAATAGAGAC-CAACAAGGAGCTTTTCAGGTATCCTCGT 568
Query 656 CTCAACAGAACAATAA 671
|||| |||||||||||
Sbjct 569 CTCAGCAGAACAATAA 584
> AT3G30120.1 | Symbols: | pseudogene, similar to CTV.22, blastp
match of 29% identity and 4.9e-74 P-value to GP|24461867|gb|AAN62354.1|AF506028_23|AF506028
CTV.22 {Poncirus trifoliata}
| chr3:11752005-11756485 REVERSE LENGTH=4481
Length=4481
Score = 939 bits (508), Expect = 0.0
Identities = 864/1022 (85%), Gaps = 80/1022 (8%)
Strand=Plus/Plus
Query 1122 TGAATCTCTTCCGCCACAGA-AGTTGCAATCTCAGTCAATTGAAAAGCTAAAGGCGGGAA 1180
||||||||||||||| || | | ||||| ||||||| ||||||||||||||||||||||
Sbjct 2417 TGAATCTCTTCCGCCGCA-ACCGATGCAAGCTCAGTCGATTGAAAAGCTAAAGGCGGGAA 2475
Query 1181 AATCGTCAATCGAACAACTTATATTTTTCTTAAATGTTCATAA-GAGCACTGTATCAGAG 1239
||| |||||| ||||| ||||| |||||||||| |||||| || ||||| ||||||||||
Sbjct 2476 AATTGTCAATGGAACACCTTATGTTTTTCTTAAGTGTTCA-AAGGAGCAATGTATCAGAG 2534
Query 1240 AAGCATAGAGACAAGTTTAGTCTATTTGAGAACCACATATTGAAGTTTACCAAGAGCCAG 1299
|| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||
Sbjct 2535 AAACATAGAGACAAGTTTAGTCTATATGAGCACCACATATTGAAATTTACCAAGAGTCAG 2594
Query 1300 ACCATGGTTCCGAGGCCAACGCAGCAGCAACAAGGGCAATTTCCTCCTTCTCAGAGCCAC 1359
|||||||||| |||| |||||||||| |||||||| ||||||||||||||||| | |
Sbjct 2595 ACCATGGTTCAGAGGTCAACGCAGCAACAACAAGGACAATTTCCTCCTTCTCA-A---A- 2649
Query 1360 CAAACGGCATTGCAATCCCAAAGTCCTCAAGTCCATGTGTCGCAGTCTCTTGAT-AGTGA 1418
| | ||| ||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 2650 C--A--GCAATGCAATCCCAAAGTCCTCAAGTCCATGTGTCACAGTCTCTTGATAAG-GA 2704
Query 1419 TCAAATGAGCTCGCGGCTGATGCCAA-TTAGCCAAAATGCGGCCTCGTCTTCGATAATGC 1477
|||||||| || ||| ||||||||| || ||||||||| || | | ||| |
Sbjct 2705 GCAAATGAGATCACGGTTGATGCCAAGTT-GCCAAAATGAGG---C--C-TCG----T-- 2751
Query 1478 CTCACTCGTTGCAGACAAGGCCTAAGCTGGAACCAAGAGATGAGAACAACATTATGGCTT 1537
|| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2752 CT---TCGTTGCAGACAAGGCCTAGGTTGGAACCAAGAGATGAGAACAACATTATGGCTT 2808
Query 1538 CTTCAGGAAGTGTCATGTTACCTTCTGGTAAACAGAATCAGCAGGCCGTACAA-TCAAAT 1596
| ||||||| ||||||||||||||||| ||||||||||| ||||||||| || |||||
Sbjct 2809 CCTCAGGAAATGTCATGTTACCTTCTGCTAAACAGAATCCTCAGGCCGTA-AACACAAAT 2867
Query 1597 ATCAGTTTGGTTCAGTCGTTGCAGCAGCAGAAGCAATTCCATCATCGCCAAATGCAACCA 1656
|||||| |||||||||||||||||||||||||| ||||| ||| || ||||||
Sbjct 2868 ATCAGTCCGGTTCAGTCGTTGCAGCAGCAGAAGCGATTCCGTCACCGACAAATG------ 2921
Query 1657 CAACAACAGTTACAACAACCACAACTAGCGAATCAGCAGCATCAAATACCGACATCACAA 1716
||||| |||||||||||||| || |||||| ||||||||||| | || |||| ||
Sbjct 2922 ---CAACA---ACAACAACCACAACAAGGGAATCATCAGCATCAAATGCAGAGATCA-AA 2974
Query 1717 -CAGACAAATGAGATGAATGATGTTAGGATGAGGCAGAGGGTCAACATTAAAGCCGGGTT 1775
||||||||||||||||||||||| ||||| ||||||| || || | | ||
Sbjct 2975 CCAGACAAATGAGATGAATGATGTGAGGATTAGGCAGA-GG------TT---G-C---TT 3020
Query 1776 GCTTCAGCAACAAGTCTCATCGAGTCAGCGCCAGGTTCCAAAGCCACAGTCTAACGTTTC 1835
| || ||| ||||||||||||||||| |||||||||||||| | |||||| |||||
Sbjct 3021 G----AGAAACTAGTCTCATCGAGTCAGCTCCAGGTTCCAAAGCAAGTGTCTAAAGTTTC 3076
Query 1836 ATCCCCTCAGATACATCACCACTCTTCTCCTCAGTTAGTTGACCAGCAGATTCTTCCTGC 1895
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3077 ATCCCCTCAGATACAGAACCACTCTTCTCCTCAGTTAGTTGACCAGCAGATTCTTCCTGC 3136
Query 1896 G--G-TTAACAAAACCAAAACTCCATTGATGTCTGGTGGCTCGCCTTTTGTTGCTCCA-- 1950
| | ||||||||||| || ||||||| |||| |||||||||||||||||||||||
Sbjct 3137 GACGGTTAACAAAACCGGCACCCCATTGAAGTCTAGTGGCTCGCCTTTTGTTGCTCCAGC 3196
Query 1951 TC--TC-CGA-TTCCCGGGGATCCTGAAATGCCTATTTCTGTTGAGTCTCCAGTTTCTGG 2006
|| || | | |||| || ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 3197 TCCATCTCCAGTTCCTGGAGATTCTGAAATGCCTATATCTGTTGAGTCTCCAGTTTCTGG 3256
Query 2007 TGTTGAAATAAAATCAACTTTAGATTCTTCTTCTAAACTTGGCACAGAGGAA-CATCCTC 2065
|||||||||||| |||||||||||||||||| |||||| |||||| | ||| | |||||
Sbjct 3257 TGTTGAAATAAACTCAACTTTAGATTCTTCTAGTAAACTGGGCACACAAGAAAC-TCCTC 3315
Query 2066 CGTTATCTGTTCCTCC-C--GAGCCAATCACGGAGCGGCCTATTGATCGACTGATAAAAG 2122
||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 3316 TGTTATCTGTTCCTCCGCCCGAGCCAATCACCGAGCGGCCTATTGATCGACTTATAAAAG 3375
Query 2123 CG 2124
||
Sbjct 3376 CG 3377
Score = 440 bits (238), Expect = 3e-122
Identities = 292/318 (92%), Gaps = 4/318 (1%)
Strand=Plus/Plus
Query 2124 GTTTCAAGCAGCATCACCAAAATCCTTGGCAGAATCTGTAAGTGAGATTAGCGCGGTCAT 2183
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 3474 GTTTCAAGCAGCATCACCAAAATCATTGGCAGAATCTGTAAGTGAGATTAGCTCGGTGAT 3533
Query 2184 CAGTATGGTTGACAGGTTTGCAGGATCATTCCATTCC-GGTGGAGGATC-ACGAGCTGGT 2241
||||||||| |||||| ||||||||| ||||| || |||||||||| | ||| ||||
Sbjct 3534 CAGTATGGTAGACAGGACTGCAGGATCGTTCCA-CCCTAGTGGAGGATCGA-GAGATGGT 3591
Query 2242 TTAGGCGAAGATTTGAGTGAGAGGACAAGAAACTTTTCGACACACGAAGAAACAAATCCG 2301
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3592 TTAGGCGAGGATTTGAGTGAGAGGACAAGAAACTTTACGACACACGAAGAAACAAATCCG 3651
Query 2302 TCTAAAAGAATGAAGCGCTCAGTCAGCATTGTGCCGCGGGATATGTCATCACAAATTGAT 2361
||||| ||||||||||| ||| ||||||||||| |||| |||||||||||||| ||||||
Sbjct 3652 TCTAAGAGAATGAAGCGATCATTCAGCATTGTGTCGCGAGATATGTCATCACATATTGAT 3711
Query 2362 AGTTATGAACAGTTCAGTAGCCTTGAATCTGAAGTCGATTCCACAGCGTCATCTGGCTCA 2421
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 3712 AGTTATGAACAGTTCAGTAGCCTTGAATCTGAAGTTGATTCCACAGCATCATCTGGCTTG 3771
Query 2422 AAAGTTAACAATATTGCG 2439
||||||||||||||||||
Sbjct 3772 AAAGTTAACAATATTGCG 3789
Score = 387 bits (209), Expect = 4e-106
Identities = 266/293 (91%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 2430 CAATATTG-CGCCTGGTTG-TGCCCTTTTGCAAGAAATCAAAGAAACAAACGGGAGACTT 2487
|||| ||| |||||| || |||| ||||||||||||||||||||||||| |||||||||
Sbjct 3855 CAATCTTGTAGCCTGG-TGATGCCATTTTGCAAGAAATCAAAGAAACAAATGGGAGACTT 3913
Query 2488 ATAGAGACAGTGGTAGAGATATGCGATGAAGATGCTACAGGAACAATCGTGACGTGTACT 2547
||||||||||||| |||||||| ||||||||| || |||||||||| || |||||||||
Sbjct 3914 GTAGAGACAGTGGTGGAGATATGTGATGAAGATACTTCAGGAACAATAGTCACGTGTACT 3973
Query 2548 TATGCTCCTGTGGCTCTCAGTG-CTACCTTCAAAGATCATTACAAGTCAGGAAAAATAGT 2606
|||||||||||||||||||||| | || |||||||||||||||||||| |||||||| ||
Sbjct 3974 TATGCTCCTGTGGCTCTCAGTGTC-ACATTCAAAGATCATTACAAGTCTGGAAAAATCGT 4032
Query 2607 AAGTCTCTCCAAACTTCTTCTTTTTC-TCCCTATGTTCAGCTTTTTGATGTCTCCAATGT 2665
|||||||||||||||||||||||||| || || || ||||||||||||||||||||||||
Sbjct 4033 AAGTCTCTCCAAACTTCTTCTTTTTCCTCACTGTGCTCAGCTTTTTGATGTCTCCAATGT 4092
Query 2666 TTCATGCAGTCACAGATTCAACCGTTACGCTTACTAGTTCCTATGGATTATCC 2718
|| |||||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 4093 TTGATGCAGGCACAGATTCAACCTTTACGCTTACTAGTTCCTTTGGATTATCC 4145
Score = 318 bits (172), Expect = 2e-85
Identities = 196/208 (94%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 2724 TGTACACAAGTATGAGGATCTATCGGCGAGAACCAGATCAAGGTTCAGTTTGTCCATGAC 2783
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 4274 TGTACACAAGTATGAGGATCTATCCGCGAGAACAAGATCAAGGTTCAGTTTGTCCATGAG 4333
Query 2784 GGAACTTTCAGAACCAGGGTCACTGAAAGAAATAGCTAAAACGTGGAATGATTGTGCGAG 2843
|||| |||||||||||||||| ||||||||||||||| ||||||||| |||||||| |||
Sbjct 4334 GGAAATTTCAGAACCAGGGTCTCTGAAAGAAATAGCTCAAACGTGGACTGATTGTGTGAG 4393
Query 2844 AGCGACAATGGTTGAGTACGCAGAGCGACATGGTGGAGGCACTTTCAGCTCCAAGTACGG 2903
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 4394 AGCGACAATGGTTGAGTACGCAGAGAGACATGGTGGAGGCACTTTCAGCTCCAAGTATGG 4453
Query 2904 TGCTTGGGAAACTGTTCTAAGAGCTTCA 2931
|||||||||||| |||||| ||||||||
Sbjct 4454 TGCTTGGGAAACGGTTCTACGAGCTTCA 4481
Score = 178 bits (96), Expect = 3e-43
Identities = 115/123 (93%), Gaps = 5/123 (4%)
Strand=Plus/Plus
Query 1 ATGGAGGGAAATACTAACTGGAAGCCTAATGAACAAGGCGGAGACT-C-C-GCTGCGAAT 57
||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1 ATGGAGGGAAATACTAACTGGAAGCCTAATGAACAAGGCGGAGACCGCGCTGCTGCGAAT 60
Query 58 AAT-GCTATTGATTGGAGATCACAACATGAGCCTGAATTACGGAAAAAGGTTCTTTCAAA 116
||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 61 AATTG-TATTGATTGGAGATCACAACTTGAGCCTGAATTACGGCAAAAGGTTCTTTCAAA 119
Query 117 AAT 119
|||
Sbjct 120 AAT 122
Score = 84.2 bits (45), Expect = 6e-15
Identities = 66/75 (88%), Gaps = 5/75 (7%)
Strand=Plus/Plus
Query 762 ACAATCTCAACCAATGATGTCACAACAATACCGAGC-GCAACATCCCATGCAGCAGCTGC 820
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||
Sbjct 1809 ACAATCTCAACCAATGATGTCACAACAATACCGC-CAGCAATATCCCATGCAGCAGCAGC 1867
Query 821 --C-TCAGAATAGAA 832
| |||||| ||||
Sbjct 1868 AGCCTCAGAACAGAA 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145835303301
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5