BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323035

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G30350.2 | Symbols: RGF4 | Encodes a root meristem growth fa...   390    5e-108


> AT3G30350.2 | Symbols: RGF4 | Encodes a root meristem growth 
factor (RGF).  Belongs to a family of functionally redundant 
homologous peptides that are secreted, tyrosine-sulfated, and 
expressed mainly in the stem cell area and the innermost 
layer of central columella cells. RGFs are required for maintenance 
of the root stem cell niche and transit amplifying cell 
proliferation.  Members of this family include: At5g60810 
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), 
At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 
(RGF8) and At5g64770 (RGF9). | chr3:11960421-11961856 
REVERSE LENGTH=772
Length=772

 Score =  390 bits (211),  Expect = 5e-108
 Identities = 258/281 (92%), Gaps = 2/281 (1%)
 Strand=Plus/Plus

Query  1    ATGATGCGATTCACAATCATAGTAATAGCTTTCCTTTTGATTATTCAGTCCCTAGAGGAG  60
            ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct  93   ATGATGCGATTCACAATCATAGTCATAGCTTTCCTTTTGATTATTCAATCCCTAGAAGAG  152

Query  61   GAACATGTCCTAGTCTATGCTCATGAAGGCGGAGAAGCTGGTCACAAGAGTCTTGACTAC  120
            |||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| 
Sbjct  153  GAACATATCCTAGTCTATGCTCATGAAGGTGGAGAGGCTGGTCACAAGAGTCTTGACTAT  212

Query  121  CTTGGAGATCAAGATTCATTGACACTGCATCCTAAAGAA-TTTTACGATGCACCGAGGAA  179
            |  |||||||||||||||| ||| |||||||| |||||| | || |||||||||||||||
Sbjct  213  CAAGGAGATCAAGATTCATCGACGCTGCATCCAAAAGAACTATT-CGATGCACCGAGGAA  271

Query  180  ACTAAGGTCCGGGAGAACAACAAGAGCCGAGAAGGAGCAAGTGACCGCGATGAACAATGA  239
            | ||||||  ||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct  272  AGTAAGGTTTGGGAGAACAACGAGAGCCGAGAAGGAACAAGTTACCGCGATGAACAATGA  331

Query  240  TAATTGGAGCTTCAAGATTTCAGGTGCATCAAAGCATTTGA  280
            || |||||||||||||||||||||||||||||| |||||||
Sbjct  332  TAGTTGGAGCTTCAAGATTTCAGGTGCATCAAAACATTTGA  372


 Score =  215 bits (116),  Expect = 3e-55
 Identities = 130/137 (95%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  287  GCCTACCGAAACTTGAACCATCTACTCCAACCAATGATATGAAGAAACTGGCTCGGTTGT  346
            ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  505  GCCTACCGACACTTGAACCATCTACTTCAACCAATGATATGGAGAAACTGGCTCGGTTGT  564

Query  347  TACGTGATGATTACCCGATCTATAGTAAGCCTCGACGCAAGCCACCGATCAATAATCGAG  406
            | ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  565  TGCGTGATGATTATCCGATCTATAGTAAGCCTCGACGCAAGCCTCCGGTCAATAATCGAG  624

Query  407  CTCCAGACAAGTTTTAA  423
            |||||||||||||||||
Sbjct  625  CTCCAGACAAGTTTTAA  641



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5