BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323036
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30380.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1175 0.0
> AT3G30380.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:11974066-11976571 FORWARD LENGTH=1558
Length=1558
Score = 1175 bits (636), Expect = 0.0
Identities = 795/870 (91%), Gaps = 17/870 (2%)
Strand=Plus/Plus
Query 167 GCTTCACTAACGCTTCTTTTATTCTCACGGTAACGCCGCCGATCTTGGTCAGATGTTTGA 226
|||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 554 GCTTCACTTACGCTTC-TTTATTCTCATGGTAACGCCGCGGATCTTGGTCAGATGTTCGA 612
Query 227 GCTCTTCTCCGAGCTCAGCCT---TCATC---TT--C------GGGTATGATTATTCGGG 272
||| ||||||||||| ||||| || || || | |||||||||||||||||
Sbjct 613 GCTTTTCTCCGAGCTTAGCCTCCATCTTCGTGTTAACTTAATTGGGTATGATTATTCGGG 672
Query 273 TTACGGGAGGTCTTCAGGGAAGCCTAGTGAGCAGAACACGTATAGCGATATAGAAGCAGT 332
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TTATGGGAGATCTTCAGGGAAGCCTAGTGAGCAGAACACGTATAGCGATATAGAAGCAGT 732
Query 333 GTATAGATGTTTGGAGGAGAAATATGGTGTGAAGGAACAGGATGTTATCTTATATGGACA 392
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 733 GTATAGATGCTTGGAAGAGAAGTATGGTGTGAAGGAACAAGATGTTATCTTATATGGACA 792
Query 393 ATCTGTAGGAAGCGGTCCGACTTTGGAATTGGCTTCTCGGTTACCTAACCTCCGAGCTGT 452
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 793 ATCTGTAGGAAGCGGCCCGACTTTAGAATTGGCTTCTCGGTTACCTAACCTACGAGCCGT 852
Query 453 TGTTCTTCATAGTGCAATTGCTTCCGGTCTTAGAGTCATGTACCCTGTCAAACGAACTTA 512
||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 853 GGTTCTTCATAGCGCTATTGCTTCCGGACTTAGAGTCATGTACCCTGTTAAACGAACTTA 912
Query 513 CTGGTTTGACATTTACAAGAATATCGAGAAGATATCTTTTGTCAAATGTCCGGTTTTAGT 572
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 913 CTGGTTCGACATTTACAAGAATGTCGAGAAGATATCGTTTGTCAAATGTCCGGTTTTAGT 972
Query 573 AGTTCACGGAACATCAGATGATGTTGTAAATTGGTCTCATGGGAAGCAATTATTCGATCT 632
| | ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 973 AATACACGGAACATCAGATGATGTTGTTAATTGGTCTCATGGGAAGCAATTATTTGAGCT 1032
Query 633 GTGTAAAGAAAAATATGAACCGCTTTGGATCAAAGGAGGGAACCATTGTGATTTAGAGTT 692
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ATGTAAAGAAAAATATGAACCGCTTTGGATCAAAGGAGGGAACCATTGTGATTTAGAGTT 1092
Query 693 ATACCCACAATACATAAAGCATCTGAGGAAATTTGTATCAGCGATTGAAAAATCGCCTCA 752
||| || ||||||||||||||||| || ||||||||||| ||||||||||| ||||| |
Sbjct 1093 ATATCCGCAATACATAAAGCATCTAAGAAAATTTGTATCGGCGATTGAAAAGTCGCCG-A 1151
Query 753 T-CTTAGAAACGGACCTGTGCCACAAACAGAGAAGGCGAGGAGCAGTACAGATATTAGAG 811
| |||||||| ||||| ||||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 1152 TACTTAGAAATGGACCGGTGCCACTAACAGAGAAGGCAAGGAGTAGTACGGATATTAGAG 1211
Query 812 AACCTGCAAGACCAAGCACAGATCAAAGAGAGAAATCAAGGACAAGCACAGATCAAAGAG 871
||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct 1212 AACCTGCAAGACCAAGCACAGATCAGAGAGATAAATCAAGAACAAGCACGGATCAAAGAG 1271
Query 872 AGATGCCGAAGCTGAGTACAGATAAAGCGAGAGCAAGCGTTGATAAGCGAGAGAGAACAA 931
|||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |
Sbjct 1272 AGATGCCGAAGCTGAGTACAGATATAGCGAGAGCAAGCGTTGATAAGAGGGAGAGAACGA 1331
Query 932 GAAAAAGCGTTGATGGGACTGATAAACCAAGTAATTCCACGGAACAGCAACTACTACAAC 991
||| |||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||
Sbjct 1332 GAAGAAGCGTTGATGGGACTGAGAAACCGAGTAATTCCGCGGAACAGCAACTAGTACAAC 1391
Query 992 CAGAGAAAGGGAGGAATAGCATTGACAGGT 1021
|||||||||| |||||||||||||||||||
Sbjct 1392 CAGAGAAAGGAAGGAATAGCATTGACAGGT 1421
Score = 268 bits (145), Expect = 6e-71
Identities = 160/167 (96%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGCGGTGACGTCATCAATGGCGGCGAAGTTTGCGTTTTTCCCGCCAAATCCGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGGGAGCGGTGACGTCATCAATGGCGGCGAAGTTTGCGTTTTTCCCGCCAAATCCGCCG 418
Query 61 TCGTACGGCGTCGAAGTGGTGGAAGGAAAGCTAAAGCTGATTGGTGTAGAGAACGTGAAG 120
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 419 TCGTACGGCGTAGAAGTGGTGGAAGGAAAGCTGAGGCTGATTGGTGTAGAGAACGTGAAG 478
Query 121 GATAACGTTGAAAGTATTGAAGCTGAAGACGAAGAGAGGGAATCAGG 167
|| || |||||| |||||||||||||||||||||||||| |||||||
Sbjct 479 GAGAATGTTGAA-GTATTGAAGCTGAAGACGAAGAGAGGTAATCAGG 524
Score = 143 bits (77), Expect = 4e-33
Identities = 77/77 (100%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1016 ACAGGTTTGGGGAGATGATAAGATCAGTAGGATTTTGCAACATAGATTGTTTCAAGCCTA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 ACAGGTTTGGGGAGATGATAAGATCAGTAGGATTTTGCAACATAGATTGTTTCAAGCCTA 1541
Query 1076 CAGCAACAGCTAAGTGA 1092
|||||||||||||||||
Sbjct 1542 CAGCAACAGCTAAGTGA 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5