BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323041
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29830.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1567 0.0
> AT3G29830.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:11737049-11738847 FORWARD LENGTH=1395
Length=1395
Score = 1567 bits (848), Expect = 0.0
Identities = 1222/1401 (87%), Gaps = 31/1401 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCAATTTACCAACGAGACAGAATATCAAGTCTACCAGATGTAGTTCTGGTTATG 60
||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATTCAGTCAACCAACGAGACAGAATATCAAGTCTACCAGATGTAGTTCTAGTTATG 60
Query 61 ATCCTCTCTTTCTTGTCCTTCAAGGATAATGTAAAGACGAGCGCTCTCTCGAAGCGCTGG 120
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 61 ATCCTCTCTTTCTTGTCCTTCAAGGATAATGTAAAGACGAGCATTCTCTCAAAGCGTTGG 120
Query 121 AGGAACCTCTGTTATGAAACAAGGAACATTTCCTTTAAGGAATCCGAGTATGTGGACCA- 179
||||| | || |||||| ||| ||||||||||||||||||||| |||||||||||| |
Sbjct 121 AGGAATATTTGCTATGAAGCAAAGAACATTTCCTTTAAGGAATCAGAGTATGTGGAC-AT 179
Query 180 CTATGTCTCCGACTATATCTCTAAAAGGGTGTCATTTGTTCGCTATATGCTCAACTGGGT 239
|| ||| | |||||| |||| ||| |||| ||||||||||| |||||||||||||||||
Sbjct 180 CTCTGTGTTTGACTATGTCTCCAAACGGGTATCATTTGTTCGGTATATGCTCAACTGGGT 239
Query 240 CTCTAGAGTTCCCATTCAGGTTATCGAAAGTTTTGAAATTTGTCTCTCTAATCCAGTGGG 299
|||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||
Sbjct 240 CTCTAGAGTTCCCATTAAGGTTATCGAAAGTTTTGAAATTTGTCTCGGTTTTCCGGTGGG 299
Query 300 CTTCGAGGCAGATATCAAGTCTTTGATTGAGTTTTCCATCTCTAGACAAGTGAAGAACTT 359
|||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 300 CTTCGAGGTAGAGATCAAGTCATTGATTGAGTTTTCCATCTCTAGACAAGTAAAGAAGTT 359
Query 360 AGTTCTTGATTTCTCAAGCCCTTTTTGG-AGTCACACATGGGATGGGTTGAGATATGATG 418
|||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||
Sbjct 360 AGTTCTTGATTTCTCAAGCCCTTTTTGGGA-TAACACATGGGATGGGTTGAGAAATGATG 418
Query 419 ACTTTGTTATTGTCTTGCCTGCACTCATTTACGGTCTACAAACCCTTGAATCATTGAAGA 478
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 419 ACTTTGTTATTGAATTGCCCGCACTCATTTACGGTCTACAAACCCTCGAATCATTGACGA 478
Query 479 TTTATGCTTGCTTGTTTGACCCCTCGA-AGTTCGCAAACTTAGGACTAAGAAAGCTCTCT 537
|||| || ||| |||||||||| |||| | ||| ||||| |||||||||||| |||||||
Sbjct 479 TTTACGCATGCATGTTTGACCCTTCGAGA-TTCACAAACGTAGGACTAAGAACGCTCTCT 537
Query 538 ATTGGTTGGTTCAGACTTAAAAAGATCGAATCTTTGCTATCAAAGTTCCCTTTGCTTGAG 597
||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 538 ATTGGTTGGTTTAGACTTGAAAAGATCGAATCTTTGTTATCAAAGTTTCCTTTGCTTGAG 597
Query 598 AGTCTGAGTATAATCTCTTGTTACCTTGATGAGATTATGTTAGCTGGGCAAATTAGAG-- 655
||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 598 AGTCTGAGTATTATCTCTTGTTACCTTGATGAGGTTAAGTTAGCTGGGCAAATTAGAGTC 657
Query 656 A-A---CTGATCATTGAGAACTGCATTATCCCTTAC-ATGTCTTATTCGTTTAACCTACC 710
| | |||||||| || ||||||||||||||| || |||| || || ||| ||||||||
Sbjct 658 AGAGAACTGATCATCGATAACTGCATTATCCCT-ACCATGTATTGTTTGTTAAACCTACC 716
Query 711 TAACATAGAAATCTTCAAGTACTCAGGCGATCTTATCTTCTTTGATTTTGC-GAAAGTGG 769
|||||||||||||||||||||||| || || | ||| |||| |||||| | |||||||
Sbjct 717 TAACATAGAAATCTTCAAGTACTCCGGAAATGTCATCGTCTTCGATTTT-CAGAAAGTGA 775
Query 770 ATATGATATTACTGAAAGAAGTGTACTTAGAATTTGGTGTAGAGTAT-AATAATGATGAA 828
|||||||||| ||||||| || |||||||| ||| | ||||| || || ||||| |||
Sbjct 776 ATATGATATTGTTGAAAGAGGTTTACTTAGATTTTTTTATAGAGCATGAA-AATGACGAA 834
Query 829 CCAAGCTTTTCAACCGAA-GAAGCCGGAAATATGCTTTCTCATCTGCTTAATGATCTTCG 887
|||| || |||| || || ||||| ||| |||| ||||| ||||| ||||||||||||||
Sbjct 835 CCAACCTATTCA-CCTAAAGAAGCTGGAGATATTCTTTCCCATCTTCTTAATGATCTTCG 893
Query 888 ACCTTCTAGGACCTTAATTGTCTGCTCTTATCTCCTTGAGGTGATTCCAGAATGTAACGA 947
| |||||||||| || | ||||||||||||||||||||||||||| |||||||||||||
Sbjct 894 ATCTTCTAGGACTTTGACCGTCTGCTCTTATCTCCTTGAGGTGATTTCAGAATGTAACGA 953
Query 948 TCCGGTTGATATGCTTTGTGACCTCAAAACACAACATTTGGTGCTAGAAACGCATT-TGC 1006
|||||||||||||||| |||| || || |||||||||||||||||||||| | | |||
Sbjct 954 TCCGGTTGATATGCTTCGTGATGTCCAAGCACAACATTTGGTGCTAGAAACCC-TCATGC 1012
Query 1007 ATCCGATGGAGTTTAGGGGAATCAAGCTCCTTCTTGATCATTGCCCGAACTTAGAGACTC 1066
|||||| ||||||| ||| || | ||||||||||||||||||||||||||||||||| |
Sbjct 1013 ATCCGAACGAGTTTACGGGTATGAGGCTCCTTCTTGATCATTGCCCGAACTTAGAGACCC 1072
Query 1067 TTACTTTCAAGATTCTTTCACCAAGACCTTTCCCTATGGCTTCAAATGGCGGCATA-AGT 1125
| || ||| || |||||| | || ||||||||||||||||||| |||| ||| | |||
Sbjct 1073 TCACGTTCCAGCTTCTTTGTCTAAAACCTTTCCCTATGGCTTCACATGGTGGC-TCCAGT 1131
Query 1126 TCACAGATATTTTGGCTGGAAAATATCTCATCCAGGTGTTTGAGAAGGACTCTCAAGACC 1185
||||| | ||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 1132 TCACATACATTATGGCTGGAAAACATCTCATCAAGGTGTTTGAGAAGGACTCTCAAGATC 1191
Query 1186 CTAGTGGTCAAGGGTTATTGTAGTAGTTGGAACGAGTTTTATTTGTTGAACTATTTTGTT 1245
|| ||||| | ||||| ||||| ||| ||||||||||| ||||| ||||||||||| |||
Sbjct 1192 CTTGTGGTTAGGGGTTTTTGTAATAGCTGGAACGAGTTCTATTTATTGAACTATTTGGTT 1251
Query 1246 CAGCCGGCGCATGGGTATGCATTGGAAAGAGTTGAACTCTACATGCCGACTTGGTTGAAA 1305
| ||||| |||||||| ||||||||||||||||||||| ||| |||| | | ||| ||
Sbjct 1252 CTGCCGGAGCATGGGTTTGCATTGGAAAGAGTTGAACTTTACTTGCCTCC--G-TTGCAA 1308
Query 1306 GAAACTGA-AAGGCAGTGGGCAC-ATTATGGTGCCGCGATGTTGCAAAGCACTTCAAATC 1363
|||| || |||||||||||| | || |||| ||||||||||| |||| ||||||||||
Sbjct 1309 GAAA-TGCCAAGGCAGTGGGC-CTATCATGGAGCCGCGATGTTACAAAAAACTTCAAATC 1366
Query 1364 GAGTACAAGTTATTTTGCACA 1384
|||||||||||||||||||||
Sbjct 1367 GAGTACAAGTTATTTTGCACA 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5