BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg323054 Length=264 Score E Sequences producing significant alignments: (Bits) Value AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 156 1e-37 AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 150 5e-36 > AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:4358652-4360099 REVERSE LENGTH=768 Length=768 Score = 156 bits (84), Expect = 1e-37 Identities = 99/106 (93%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59 |||| ||||||| ||||||||||||||||||||||||||||| || |||| |||||||| Sbjct 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488 Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGAGTTT 105 ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTT 534 Score = 150 bits (81), Expect = 5e-36 Identities = 104/115 (90%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 116 AGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCG 175 ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 587 AGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCG 646 Query 176 TTGAGGACAGTGACATAGATGAAGACTGCA-TATTTTTCGAAAACCTAAGAGAAA 229 ||||||||||||| |||||||||||| || | ||| |||||||||||||||| Sbjct 647 TTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAA 701 Score = 95.3 bits (51), Expect = 2e-19 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 208 TTTTTCGAAAACCTAAGAGAAAGGAAGAGGCTACAACAACCTATGAAGCTGAACTAA 264 ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 712 TTTTTCGAAAACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768 > AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07526.3); Has 57 Blast hits to 57 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346 REVERSE LENGTH=765 Length=765 Score = 150 bits (81), Expect = 5e-36 Identities = 101/110 (92%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59 |||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| Sbjct 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461 Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGAGTTT-CTT 108 | ||||||||||||||||| ||||||||||||||||||||| |||| ||| Sbjct 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTT 511 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12064259760 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5