BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323054
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 156 1e-37
AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 150 5e-36
> AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768
Score = 156 bits (84), Expect = 1e-37
Identities = 99/106 (93%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
|||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGAGTTT 105
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTT 534
Score = 150 bits (81), Expect = 5e-36
Identities = 104/115 (90%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 116 AGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCG 175
||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 587 AGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCG 646
Query 176 TTGAGGACAGTGACATAGATGAAGACTGCA-TATTTTTCGAAAACCTAAGAGAAA 229
||||||||||||| |||||||||||| || | ||| ||||||||||||||||
Sbjct 647 TTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAA 701
Score = 95.3 bits (51), Expect = 2e-19
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 208 TTTTTCGAAAACCTAAGAGAAAGGAAGAGGCTACAACAACCTATGAAGCTGAACTAA 264
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 712 TTTTTCGAAAACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
> AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G07526.3);
Has 57 Blast hits to 57 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346
REVERSE LENGTH=765
Length=765
Score = 150 bits (81), Expect = 5e-36
Identities = 101/110 (92%), Gaps = 3/110 (3%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
|||| ||||||| ||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461
Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGAGTTT-CTT 108
| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTT 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5