BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323059
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42170.1 | Symbols: | BED zinc finger ;hAT family dimerisat... 3094 0.0
> AT3G42170.1 | Symbols: | BED zinc finger ;hAT family dimerisation
domain | chr3:14320952-14324069 FORWARD LENGTH=2452
Length=2452
Score = 3094 bits (1675), Expect = 0.0
Identities = 1877/1974 (95%), Gaps = 16/1974 (1%)
Strand=Plus/Plus
Query 3 GGAAACAGCTTTGGAGGTGTACAATGATACTGAAACGAG-GTCACCAGAAACACAACCAA 61
||||||||||||||| ||||||||||| ||||||| | | |||||||| || ||||| |
Sbjct 343 GGAAACAGCTTTGGAAGTGTACAATGACACTGAAATG-GTTTCACCAGAGACCCAACCGA 401
Query 62 TCAAGCGACGCAAGAAGAAGTCGATGGTGTGGGAACATTTCACAATCGAGGCGGTGGAAC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 402 TCAAGCGACGCAAGAAGAAGTCGATGGTGTGGGAACATTTCACAATCGAGGCGGTAGAAC 461
Query 122 CGAATTGCAGAAGGGCTTTTTGCAAAGGATGTAACCAGAGTTTTGCTTATAGCAACGGTA 181
|||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 462 CGAACTGCAGAAGAGCTTTTTGCAAAGGATGTAATCAGAGTTTTGCTTACAGCAACGGTA 521
Query 182 ACAAAGTGGCTGGTACTAGCCATCTTAAGCGTCACATTGCTAAGGGGACATGTCCTGCAC 241
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 522 ACAAAGTGGCTGGTACTAGCCATCTTAAGCGTCACATTTTTAAGGGGACATGTCCTGCAC 581
Query 242 TTATCCATACACAAGACAATGACAACAA-CCAGCTCATGACTACTCCTTACACTCCCAAG 300
|||||||||| || |||||||||||||| ||| || ||| ||||||||||||||||||||
Sbjct 582 TTATCCATACGCATGACAATGACAACAACCCA-CTGATGTCTACTCCTTACACTCCCAAG 640
Query 301 AGTGACACCCCGAGAAGGCGTTACCGAACCCAG-AC--CCCTAGTCCTTTTGTTGCGTTT 357
| |||||| ||||||||||||||||| | ||| || | ||||||| | ||||||||||
Sbjct 641 ACTGACACTCCGAGAAGGCGTTACCGGTCTCAGAACAACGCTAGTCCCTATGTTGCGTTT 700
Query 358 AATCAGGACAAGTGTCGTCAAGAGATAGCTAAGATGATCATTATGCATGACTACCCTCTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AATCAGGACAAGTGTCGTCAAGAGATAGCTAAGATGATCATTATGCATGACTACCCTCTT 760
Query 418 CACATGGTTCAGCATCCAGGGTTCATCTCGTTCGTGCAGAGTATTCAGCCTCACTTTGAT 477
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 761 CACATGGTTCAGCATCCAGGTTTTGTCTCGTTCGTGCAGAGTATTCAGCCTCACTTTGAT 820
Query 478 GCTGTGAGCTTTAACAATGTTCAAGGAGACTGTGTGGCGACTTACCTTGCAGAAAAGCAG 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 821 GCTGTGAGCTTTAACAATGTTCAAGGAGACTGTGTGGCGACTTACCTTGCTGAAAAGCAG 880
Query 538 AATGTCATGAAGTCTTTAGAAGGGATTCCTGGACGCTTCTGTCTAACGCTGGACTTCTGG 597
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 881 AATGTCATGAAGTCTTTAGAAGGGATTCCTGGACGCTTCTGTCTAACGCTCGACTTTTGG 940
Query 598 ACGTCCAAGCTAACTCTTGGGTATGTGTTTATAACTGCTCACTTCATTGACAGCGATTGG 657
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 941 ACCTCCAAGCTAACTCTTGGGTATGTGTTTATAACTGCTCACTACATTGACAGCGATTGG 1000
Query 658 AAGATACAAAAGAAGCTTCTCAATGTTATGATGGAATCGTATCCAGAAGCTGACGAAGCC 717
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1001 AAGATACAAAAGAAGCTTCTCAATGTTTTGATGGAATCGTATCCAGAAGCTGACGAAGCC 1060
Query 718 TTGAGTCTTGTGGTTGCAAATTGTGTTTCTGAATGGGGTCTTGAGGGAAAGTTGTTT-TC 776
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1061 TTGAGTCTCGCGGTTGCAAATTGTGTTTCTGAATGGGGTCTGGAGGGAAAGTTGTTTAAC 1120
Query 777 TGTCACCTTCAACCATCCGGCGAGTAACTCTGCAGTTGAAAACATCAGACCTCAACTCTG 836
|||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1121 -GTCACCTTTAACCACCCGGCGAGTAACTCTGCGGTTGAAAACATCAGACCTCAACTCTG 1179
Query 837 CATCAAGAACCCTGGAATTCTGGATGGTCAGTTGGTAATAGGGAATTGTGTTGCCCGAAC 896
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CATCAAGAACCCTGGGATTCTGGATGGTCAGTTGGTAATAGGGAATTGTGTTGCCCGAAC 1239
Query 897 ATTTAGTAGCCTCGCTAAAGATGTCCTGGAGAAAGGAAAAGATGTGATCAAGAACATCCG 956
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1240 ATTTGGTAGCCTCGCTAAAGATGTCCTGGAGAAAGGGAAAGATGTGATCAAGAACATCCG 1299
Query 957 GGACAGTGTGAAGCACGTGAAAACCTCAGAGTCCCATGAGGAGAGGTTTATTGAGCTCAA 1016
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1300 GGACAGTGTGAAGCATGTGAAAACGTCAGAGTCCCATGAGGAGAGGTTTACTGAGCTCAA 1359
Query 1017 GGAACAGCTTCAAGTTCCAAGCGAGAAGGTACTTTCTCTTGATGATCAGACGCAATGGAA 1076
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1360 GGAACAGCTTCAAGTTCCAAGCGAGAAGGTGCTTTCTCTTGATGATCAGACGCAATGGAA 1419
Query 1077 CACAACATATAAGATGCTTGTGGCTGCTTCAGAATTAAAGGAAGTGTTCTCGTGCTTAGA 1136
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CACAACATATATGATGCTTGTGGCTGCTTCAGAATTAAAGGAAGTGTTCTCGTGCTTAGA 1479
Query 1137 CACTGCTGATCCTGACTACAAGAAACCTCCTTCAGCAGAGGATTGGAGGCATGTGGAGGC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 CACTGCTGATCCTGACTACAAGAAACCTCCTTCAGCAGAGGATTGGAGGCATGTGGAGGC 1539
Query 1197 ACTTTGCACATTCCTGAAGCCTCTTTTCGAAGCAGCCTCCACTCTTCAATCTACTGGAAA 1256
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1540 ACTTTGCACATTCCTGAAGCCTCTTTTCGAAGCAGTCTCCACTCTTCAATCTACTGGAAA 1599
Query 1257 CCCATCTGCTGTTACCTTCTTTCATGAAGTTTGGAAGACACAGTCAGATCTGTCTCGGGC 1316
||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 1600 CCCATCTGCTGTTACCTTCTTCCATGAAGTGTGGAAGACACAGTCAGATTTGTCTCGGGC 1659
Query 1317 AATTGCTGGAGAGGATCCTTATGTCGCAGGTATTGCTAAAACCATGAAAGATAAGGTTGA 1376
|| |||||||||||||||| |||| |||||||||||||||||||| |||| ||||| ||
Sbjct 1660 GATAGCTGGAGAGGATCCTTTTGTCACAGGTATTGCTAAAACCATGCAAGAGAAGGTAGA 1719
Query 1377 CAAGTACTGGAGAGACTGTAGCTTGGTTTTGGCAATGGCGGTGGTGATGGATCCTCGGTT 1436
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1720 CAAGTACTGGAGAGACTGTAGCTTGGTTTTGGCAATGGCCGTGGTGATGGATCCTCGGTT 1779
Query 1437 CAAGATGAAGCTTGTCGAGTTCAGTTTCTCCAAGATATTTGGAGAAGATGCTGGGAAGAA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 CAAGATGAAGCTTGTCGAGTTCAGTTTCTCCAAGATATTTGGAGAAGATGCTGGGAAGAA 1839
Query 1497 CATCAAGACCGTGGATGATGGGATCCACGAGCTCTTCAGCGAATACATGGCGCTCCCATC 1556
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1840 CATCAAGACTGTGGATGATGGGATCCACGAGCTCTTCACCGAATACATGGCGCTCCCGTC 1899
Query 1557 GCCCCTAAAAC-CGACATCTGAAGGTGGGAAAGCAGATGGACTGTCAGATTTTGACACGT 1615
||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1900 GCCCC-AAAACACGACATCTGAAGGTGGGAAAGCAGATGGACTGTCGGATTTTGACACGT 1958
Query 1616 ACATAATGGAGACAACGGGGCAGAATCTGAAATCAGAGCTTGACCAGTACCTTGATGAAA 1675
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1959 ACATAATGGAGACAACGGGGCAGAATCTGAAATCAGAGCTGGACCAGTACCTTGATGAAA 2018
Query 1676 CGCTGCTTCCCAGGGTTCAGGAGTTTGATGTTCTTGACTGGTGGAAACAGAACAAACTCA 1735
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2019 CCCTGCTTCCCAGGGTTCAGGAGTTTGATGTTCTTGACTGGTGGAAACAGAACAAGCTCA 2078
Query 1736 AGTACCCGACATTGTCGAAGATGGCTAGAGACATCCTCTCGATCCCGGTTTCAGCTGCAG 1795
|||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 2079 AGTACCCGACCTTGTCAAAGATGGCTAGAGACATCCTTTCAATCCCGGTTTCAGCTGCAG 2138
Query 1796 CCTTTGACTATGTCTTTGACATGGAGCCAAGGGAGATGGATGAGTATAAGACGTCACTGA 1855
||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||
Sbjct 2139 CCTTTGACTATGTCTTTGACATGGAACCGAGGGAAATGGATGAGTACAAGACGTCACTGA 2198
Query 1856 GGCCCGAGACAGTGGAGGCTCTGATTTGCGCGAGGGAATGGCTTCTCGAGA--A-TGCTT 1912
||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||
Sbjct 2199 GGCCCGAGACAGTGGAGGCTCTGATTTGCGCAAGGGAATGGCTTCTTGAGAGTAATGCTT 2258
Query 1913 CTTCTTCTGCAGCTGCGCAAA-TGGCAAGTGCTATCATCAAATCTGAAGCATAG 1965
||||||| ||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 2259 CTTCTTCCGCAGCTGCGCAAAATG-CAAGTGCTACCATCAAATCTGAAGCATAG 2311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5