BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323060
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42180.1 | Symbols: | Exostosin family protein | chr3:14324... 1964 0.0
> AT3G42180.1 | Symbols: | Exostosin family protein | chr3:14324274-14328676
REVERSE LENGTH=1471
Length=1471
Score = 1964 bits (1063), Expect = 0.0
Identities = 1208/1278 (95%), Gaps = 9/1278 (1%)
Strand=Plus/Plus
Query 1 ATGTCCTCTCTTCTTGATCACACAAATGCATTACAATCCTCA---TCTTC--C-TCGTTA 54
|||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||
Sbjct 168 ATGTCCTCTCTTCTTGTTCACACAAATGCATTACAATCCTCATCTTCTTCTTCTTCGTTA 227
Query 55 TACTCTCCTCCGAATACCATAAAGAGAAGGAGCAATCTTGAGAAAAGAGAAGAAGAGTTG 114
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TACTCTCCTCCGATTACCGTAAAGAGAAGGAGCAATCTTGAGAAAAGAGAAGAAGAGTTG 287
Query 115 AGGAAAGCAAGGGCTGAAATTAGAAGAGCCGTCAGGTTTAAGAATTACACGTCCAACGAA 174
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 288 AGGAAAGCAAGGGCTGCAATTAGAAGAGCCGTCAGGTTTAAGAATTGCACGTCCAACGAA 347
Query 175 GAAG---TTACTTATATCCCCACAGGCCAGATCTACAGAAACTCATTTGCCTTTCATCAA 231
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GAAGTTATTACTTATATCCCCACAGGCCAGATCTACAGAAACTCATTTGCCTTTCATCAG 407
Query 232 AGTCATATAGAAATGATGAAAAGATTTAAAGTCTGGTCGTACAGAGAAGGAGAGCAGCCA 291
||||| |||||||||||||||| |||||| || |||||||||| ||||||||||||||||
Sbjct 408 AGTCACATAGAAATGATGAAAACATTTAAGGTGTGGTCGTACAAAGAAGGAGAGCAGCCA 467
Query 292 CTGGTTCACGATGGACCGGTAAATGATATATACGGAATCGAGGGGCAGTTCATTGACGAG 351
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 468 CTGGTTCACGATGGACCGGTAAATGATATCTACGGAATCGAGGGACAGTTCATTGACGAG 527
Query 352 CTTAGTAACGTGATGGGCGGACCAAGTGGCCGGTTTAGGGCTAGCCGGCCGGAAGAAGCT 411
|||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 528 CTTAGTTACGTGATGGGCGGACCAAGTGGCCGGTTTAGAGCTAGCCGGCCAGAAGAAGCC 587
Query 412 CATGCCTTCTTCTTACCGTTCTCCGTTGCCAATATTGTCCACTACGTCTACCAACCCATT 471
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 588 CATGCCTTCTTCTTACCCTTCTCCGTTGCCAACATTGTTCACTACGTCTACCAACCCATT 647
Query 472 ACCTCGCCGGCTGATTTCAACCGCGCCCGCCTCCACCGGATCTTTAACGATTATGTAGAC 531
|||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 648 ACCTCGCCAGCCGATTTCAACCGGGCCCGTCTCCACCGGATTTTTAACGATTATGTAGAC 707
Query 532 GTCGTGGCTCGCAAACACCCTTTTTGGAACCAAAGCAATGGCGCTGACCATTTCATGGTC 591
|| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 708 GTAGTGGCTCACAAGCACCCTTTTTGGAACCAAAGCAATGGTGCTGACCATTTCATGGTC 767
Query 592 TCTTGCCATGATTGGGCTCCCGATGTGGCGGATAGTAAACCAGAGTTTTTCAAGGACTTC 651
|||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 768 TCTTGCCACGATTGGGCTCCCGATGTGCCAGATAGTAAACCAGAGTTTTTCAAGAACTTC 827
Query 652 ATGAGAGGACTATGCAACGCCAACACAACGGAAGGTTTCAGACCAAACATCGATATCTCT 711
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 828 ATGAGAGGACTATGCAACGCCAACACATCGGAAGGTTTCAGACGAAACATCGATTTCTCT 887
Query 712 ATACCAGAGATTAACATTCCTAAAAGGAAGCTAAAGCCACCGTTCATGGGCCAAACCCCT 771
||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| ||||
Sbjct 888 ATACCGGAGATTAACATTCCTAAAAGGAAGCTAAAGCCACCATTTATGGGACAAAACCCT 947
Query 772 GAGAACAGGACGATCTTGGCTTTCTTTGCAGGAAGAGCTCACGGATACATAAGGGAAGTC 831
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 948 GAGAACAGGACGATCTTGGCTTTCTTCGCAGGAAGAGCTCACGGATACATTAGGGAAGTT 1007
Query 832 TTGTTCACTCACTGGAAGGGCAAGGATAAAGACGTTCAAGTGTATGACCACCTCACAAAG 891
||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 TTGTTCAGTCACTGGAAGGGTAAGGATAAAGACGTTCAAGTTTATGACCACCTCACAAAG 1067
Query 892 GGACAAAACTATCATGAATTGATTGGTCATAGCAAGTTTTGTCTTTGTCCTAGTGGCTAC 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GGACAAAACTATCATGAATTGATTGGTCATAGCAAGTTTTGTCTTTGTCCTAGTGGCTAC 1127
Query 952 GAGGTGGCTAGCCCTAGAGAGGTCGAAGCCATCTACTCAGGCTGCGTCCCGGTTGTCATA 1011
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GAGGTGGCTAGTCCTAGAGAGGTCGAAGCCATCTACTCAGGCTGCGTCCCGGTTGTCATA 1187
Query 1012 TCCGACAACTACTCACTTCCGTTCAACGACGTGCTTGATTGGAGCAAGTTCTCGGTAGAG 1071
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1188 TCGGACAACTACTCGCTTCCGTTCAACGACGTGCTTGATTGGAGCAAGTTCTCGGTTGAG 1247
Query 1072 ATCCCGGTCGACAAAATCCCTGATATTAAGAAGATTTTGCAAGAGATTCCGCATGACAAG 1131
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1248 ATCCCGGTCGACAAAATTCCTGATATTAAGAAGATTTTGCAAGAGATTCCACATGACAAA 1307
Query 1132 TATATAAGGATGTATCAAAATGTTATGAAAGTTAGAAGGCATTTTGTGGTGAACCGCCCG 1191
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1308 TATTTAAGGATGTATCGAAATGTTATGAAAGTTAGAAGGCATTTTGTGGTGAACCGTCCG 1367
Query 1192 GCTCAACCGTTTGATGTGATCCACATGATACTTCACTCCGTTTGGTTAAGGAGGCTAAAC 1251
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1368 GCTCAACCATTTGATGTGATCCACATGATTCTTCACTCGGTTTGGTTAAGGAGGCTTAAC 1427
Query 1252 ATTAGGTTGCCTTCTTGA 1269
||||||||||||||||||
Sbjct 1428 ATTAGGTTGCCTTCTTGA 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5