BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323065
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28664.1 | Symbols: | transposable element gene | chr5:1068... 627 6e-179
AT1G43722.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 477 7e-134
AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 472 3e-132
AT4G05526.1 | Symbols: | transposable element gene | chr4:2811... 361 7e-99
AT3G42875.1 | Symbols: | transposable element gene | chr3:1495... 315 6e-85
AT4G06614.1 | Symbols: | transposable element gene | chr4:3730... 294 7e-79
AT5G28672.1 | Symbols: | transposable element gene | chr5:1070... 259 3e-68
AT5G28073.1 | Symbols: | transposable element gene | chr5:1008... 130 2e-29
> AT5G28664.1 | Symbols: | transposable element gene | chr5:10687264-10688628
REVERSE LENGTH=1365
Length=1365
Score = 627 bits (339), Expect = 6e-179
Identities = 428/472 (91%), Gaps = 2/472 (0%)
Strand=Plus/Plus
Query 343 TATTATCTTGTTGATTCTGGTTATCCAAACAAACAAGAGTTTTTGGCTCCTTATAGATCA 402
|||||||| ||||||||| | |||||||||||| |||| ||| |||||||||||||||||
Sbjct 838 TATTATCTCGTTGATTCTAGCTATCCAAACAAATAAGAATTTCTGGCTCCTTATAGATCA 897
Query 403 TCACGAAACCGAGTTGTGAGATATCATATGTCACAATTCTATTCTGGTCCTCCTCCAAGG 462
|| |||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 898 TCCCGAAACCGCGTTGTGAGATATCATATGTCTCAATTCTATTATGGTCCTCCTCCTAGG 957
Query 463 AATAAACATGAACTGTTCAACCAATGTCACGCATCTTTACGTTCGGTTATCGAGAGAACT 522
|||| ||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 958 AATACACATGAATTATTCAACCAATGTCACACATCTTTACGTTCTGTTATCGAGAGAACT 1017
Query 523 TTTGGAGTTTGGAAGAAAAAATGGAGGATTATTTCTGATTTCCCAAGATATAATGTTCAC 582
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1018 TTTGGAGTTTGGAAGAAAAAATGGAGAATTATTTCTGATTTTCCAAGATATAATGTTCAC 1077
Query 583 ATTCAAAAAAGAGT-AGTAATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAA 641
|||||||||||||| | ||||||||||| || ||||||||||||| || |||| ||||||
Sbjct 1078 ATTCAAAAAAGAGTGA-TAATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAA 1136
Query 642 TTTCTCAGATGCAGATTTTGCAGATGTAATGACAGAAACAAATATAAACAACGGTGATTT 701
||| | ||| ||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 1137 TTTTTTGGATTCAGATTTTGTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTT 1196
Query 702 TGAGCATGATGTATGTGACATGGATGCAACAGAGTTAGCAGATGGAGAATATATGACGCA 761
||||||||||||| | |||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1197 TGAGCATGATGTAAGCGACATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCA 1256
Query 762 AATAAGAGACAATATTGCAAATATGTTATGGGGAAATCAAAATAATAGATAA 813
||||||||||||||||| |||||| |||||| |||||||| || | |||||
Sbjct 1257 AATAAGAGACAATATTGAAAATATTTTATGGAAAAATCAAAGTAGTCGATAA 1308
> AT1G43722.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G28730.1);
Has 924 Blast hits to 912 proteins in 109 species: Archae
- 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661;
Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:16496403-16497377
FORWARD LENGTH=975
Length=975
Score = 477 bits (258), Expect = 7e-134
Identities = 313/340 (92%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 1 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAGACAAATTACGGTCTACAA 60
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||
Sbjct 214 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAAACAAATTATGATCTTCAG 273
Query 61 CCAACACTAAATATTAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGGCAC 120
|| ||| | ||||| || |||||||||||||| || ||||||||||||||||||||||||
Sbjct 274 CCTACATTGAATATAAGTATTGAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGGCAC 333
Query 121 AATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGGCA-GAAATCAAGAAACTGTGCAGAG 179
||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 334 AATGAAGTTTATAGAGATGTTGGTTTAAGATTTGG-ACGAAATCAAGAAACTGTGCAAAG 392
Query 180 AAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAACTCC 239
||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 393 AAAATTTAGAGAAGTTCTTACGGCAACTGAATTATTAGCATGTGATTATATTAGAACTCC 452
Query 240 AACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGATCGGAGATATTGGCC 299
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 453 GACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCAAAGATATTGGCC 512
Query 300 ATATTTTAGTGGATTCGTTGAAGCTATGGATGGAACTCAT 339
|||||||||||||||||||| |||||||||||| ||||||
Sbjct 513 ATATTTTAGTGGATTCGTTGGAGCTATGGATGGTACTCAT 552
> AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 40% identity and 8.4e-38 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:15803993-15806948 FORWARD
LENGTH=2956
Length=2956
Score = 472 bits (255), Expect = 3e-132
Identities = 312/340 (92%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 1 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAGACAAATTACGGTCTACAA 60
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||
Sbjct 2222 ATGTCACTTCCATGTTTCACGACATTGTGTAATATGTTGCAAACAAATTATGGTCTTCAG 2281
Query 61 CCAACACTAAATATTAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGGCAC 120
|||||| | ||||| || ||| |||||||||| || ||||||||||||||||||||||||
Sbjct 2282 CCAACATTGAATATAAGTATTAAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGGCAC 2341
Query 121 AATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCAGAG 179
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 2342 AATGAAGTTCAAATAGATGTTGGTTTAAGATTTGGACA-AAATCAAGAAACTGTGCAAAG 2400
Query 180 AAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAACTCC 239
||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 2401 AAAATTTAGAGAAGTTCTTACGGAAACTGAATTATTAGCATGTGATTATATTAGAACTCC 2460
Query 240 AACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGATCGGAGATATTGGCC 299
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 2461 GACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAAGTAGACCGAAGATATTGGCC 2520
Query 300 ATATTTTAGTGGATTCGTTGAAGCTATGGATGGAACTCAT 339
|||||||||||||||||||| |||||||||||| || |||
Sbjct 2521 ATATTTTAGTGGATTCGTTGGAGCTATGGATGGGACACAT 2560
> AT4G05526.1 | Symbols: | transposable element gene | chr4:2811266-2814539
FORWARD LENGTH=3274
Length=3274
Score = 361 bits (195), Expect = 7e-99
Identities = 282/324 (87%), Gaps = 5/324 (2%)
Strand=Plus/Plus
Query 15 TTTCACAACATTGTGTAATATGTTGCAGACAAATTACGGTCTACAACCAACACTAAATAT 74
||| ||||||||||| | | || | || ||||||||||||||||||||||||||||||||
Sbjct 2246 TTT-ACAACATTGTGCAGTCTGCTACAAACAAATTACGGTCTACAACCAACACTAAATAT 2304
Query 75 TAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGGCACAATGAAGTTCAAAG 134
|||||||| ||| |||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 2305 AAGCATTGAGGAATGTGTGGCTATGTTTTTACGAATATGTGGGCATAATGAAGTTCAAAG 2364
Query 135 AGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCAGAGAAAATTTAGG-GAA 192
|||||||||||| |||||||| | |||||||||| || ||| ||||||||||| || |||
Sbjct 2365 AGATGTTGGTTTGAGATTTGGGC-GAAATCAAGAGACCGTGAAGAGAAAATTT-GGAGAA 2422
Query 193 GTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAACTCCAACAAGACAAGAA 252
||||||||||| ||||||||| | |||||||||||||| |||||||||| || |||||
Sbjct 2423 GTTCTTACGGCAACTGAATTACTAGCATGTGATTATATTAGAACTCCAAAAACTCAAGAT 2482
Query 253 CTTTATCGAATTCCTGAAAGACTTCAGGTAGATCGGAGATATTGGCCATATTTTAGTGGA 312
|| |||||| || ||| | |||||| |||||||| ||| |||| |||||||||||||||
Sbjct 2483 CTACATCGAAATCTTGAGATACTTCAAGTAGATCGAAGAAATTGACCATATTTTAGTGGA 2542
Query 313 TTCGTTGAAGCTATGGATGGAACT 336
|| |||| |||||||||||| |||
Sbjct 2543 TTTGTTGGAGCTATGGATGGGACT 2566
Score = 298 bits (161), Expect = 6e-80
Identities = 363/458 (79%), Gaps = 23/458 (5%)
Strand=Plus/Plus
Query 352 GTTGATTCTGGTTATCCAAACAAACAAGAGTTTTTGGCTCCTTATAGATCATCACGAAAC 411
||||||||||| ||||||||| ||| || |||||||||||||| ||||||||| ||
Sbjct 2785 GTTGATTCTGGCTATCCAAACGGACATGAATTTTTGGCTCCTTACAGATCATCAAGAGGT 2844
Query 412 CGAGTTGTGAGATATCATATGTCACAATTCTATTCTGGTCCTCCTCCAAGGAATAAACAT 471
|| ||||||| ||||||||||| || ||||||||||| || |||||||| |||||| |
Sbjct 2845 GGAATTGTGAGGTATCATATGTCGCAGTTCTATTCTGGACCACCTCCAAGAAATAAAAAA 2904
Query 472 GAACTGTTCAACCAATGTCACGCATCTTTACGTTCGGTTATCGAGAGAACTTTTGGAGTT 531
||| | || || | |||||| | || |||||||| || |||||||||||||||||||||
Sbjct 2905 GAATTATTTAATCGATGTCATGTGTCATTACGTTCAGTAATCGAGAGAACTTTTGGAGTT 2964
Query 532 TGGAAGAAAAAATGGAGGATTATTTCTGATTTCCCAAGATATAATGTTCACATT-CAAAA 590
|||||||| ||||||| ||| ||| ||||||||||||||||| | |||| | | |||||
Sbjct 2965 TGGAAGAAGAAATGGATAATTCTTTGTGATTTCCCAAGATATAGTATTCA-AGTACAAAA 3023
Query 591 AAGAGTAGTAATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAATTTCTCAGA 650
||| | |||||| ||||| |||||||||| ||||| ||| |||||||||||| | |||
Sbjct 3024 GAGAATGGTAATGACTACAATGGGATTACACAATTTTTTCAAAATTTCAAATTTTTTAGA 3083
Query 651 TGCAGATTTTGCAGATG-TAATGACAGAAACAAATATAAACAACGGTGATTTTGAGCATG 709
| | || |||| | || || | ||||| || || | ||| |||| ||
Sbjct 3084 AGTA-ATGA--CAGAGGCTA--GA-ATTAACAA-TA----CA--G---ATTGGGAGCCTG 3127
Query 710 ATGTATGTGACATGGATGCAACA-GA-GTTAGCAGATGGAGAATATATGACGCAAATAAG 767
| || ||| ||||| |||| | || || |||||||||||||| |||||| ||||||||
Sbjct 3128 AAATAAATGATATGGAAGCAA-ATGAAGT-AGCAGATGGAGAATTTATGACACAAATAAG 3185
Query 768 AGACAATATTGCAAATATGTTATGGGGAAATCAAAATA 805
||||||||||||| ||||||| |||| |||| ||||||
Sbjct 3186 AGACAATATTGCAGATATGTTGTGGGCAAATAAAAATA 3223
> AT3G42875.1 | Symbols: | transposable element gene | chr3:14951431-14952669
FORWARD LENGTH=1239
Length=1239
Score = 315 bits (170), Expect = 6e-85
Identities = 239/272 (88%), Gaps = 5/272 (2%)
Strand=Plus/Plus
Query 1 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAGACAAATTACGGTCTACAA 60
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 229 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAAACAAATTATGGTCTTCAG 288
Query 61 CCAACACTAAATATTAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGGCAC 120
|||||| | ||||| || ||||||||||| || || ||||||||||| |||||||| |||
Sbjct 289 CCAACATTGAATATAAGTATTGAAGAAAGAGTTGCGATGTTTCTACGAATATGTGGACAC 348
Query 121 AATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCAGAG 179
||| ||||||| ||||| | ||||||||||||||| | ||||| |||| | |||||||||
Sbjct 349 AATCAAGTTCAGAGAGACGATGGTTTAAGATTTGGAC-GAAATAAAGAGATTGTGCAGAG 407
Query 180 AAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAACTCC 239
||| ||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 408 AAAGTTTAGAGAAGTTCTTACGGCAACTGAATTATTAGCATGTGAATATATTAGAACTCC 467
Query 240 -AACAAGACAAGAACTTTATCGAATTCCTGAA 270
|| |||||||||| |||||||| |||| |||
Sbjct 468 GAA-AAGACAAGAATTTTATCGAGTTCC-GAA 497
> AT4G06614.1 | Symbols: | transposable element gene | chr4:3730027-3731235
FORWARD LENGTH=1209
Length=1209
Score = 294 bits (159), Expect = 7e-79
Identities = 273/328 (83%), Gaps = 8/328 (2%)
Strand=Plus/Plus
Query 16 TTCACAACATTGTGTAATATGTTGCAGACAAATTACGGTCTACAACCAACACTAAATATT 75
|||||||||||||| | | |||| || ||||||||| |||| ||||||||||| ||||
Sbjct 253 TTCACAACATTGTGCAGTCTGTTACAAACAAATTACAATCTATAACCAACACTATATATA 312
Query 76 AGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGGCACAATGAAGTTCAAAGA 135
||||||||| ||| ||| ||||||||| ||| ||| || ||||||||||||||||||||
Sbjct 313 AGCATTGAAAAAAATGTTGCTATGTTTTTACAAATAAGTAGGCACAATGAAGTTCAAAGA 372
Query 136 GATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCAGAGAAAATTTAGGGAAG- 193
||||||||||| |||||||| | |||||||||| || ||| ||||||||||| ||||||
Sbjct 373 GATGTTGGTTTGAGATTTGGAC-GAAATCAAGAGACCGTGAAGAGAAAATTTGGGGAAGG 431
Query 194 TTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAACTCCAACAAGACAAGAAC 253
|| |||| | ||||||||||| |||| | ||||||| ||||||||||||| |||||
Sbjct 432 TT-TTACAACAACTGAATTATTAGCATCTAATTATATTAGAACTCCAACAACTCAAGA-- 488
Query 254 TTTA--TCGAATTCCTGAAAGACTTCAGGTAGATCGGAGATATTGGCCATATTTTAGTGG 311
|||| || |||| |||| |||||| | ||| || | |||||||| | |||||||||||
Sbjct 489 TTTACATCTAATTACTGAGAGACTTGAAGTATATTGAAGATATTGACTTTATTTTAGTGG 548
Query 312 ATTCGTTGAAGCTATGGATGGAACTCAT 339
||| ||| |||||||||||| ||||||
Sbjct 549 ATTTATTGGAGCTATGGATGGGACTCAT 576
> AT5G28672.1 | Symbols: | transposable element gene | chr5:10700385-10701826
FORWARD LENGTH=1442
Length=1442
Score = 259 bits (140), Expect = 3e-68
Identities = 372/480 (78%), Gaps = 31/480 (6%)
Strand=Plus/Plus
Query 338 ATAAGTATTATCTTGTTGATTCTGGTTATCCAAACAAACAAGAG-TTTTTGGC-TCCTTA 395
||||||||||| | ||||||||||| |||||||| ||||||| | |||||||| | ||||
Sbjct 765 ATAAGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAG-GCTTTTTGGCAT-CTTA 822
Query 396 TAGATCATCACGAAACCGAGTTGTGAGATATCATATGTCACAATTCTATTCTGGTCCTCC 455
| |||| || || ||| ||||| | | ||||| |||||||| |||| |||||||||
Sbjct 823 TCGATCTTCGCGGAACAGAGTT-TTCGGTATCACATGTCACAGCTCTACAATGGTCCTCC 881
Query 456 TCCAAGGAATAAACATGAACTGTTCAACCAATGTCACGCATCTTTACGTTCGGTTATCGA 515
|| || ||||||||||| |||| || | |||||| |||||||||||||| ||||| ||
Sbjct 882 TCTTAGAAATAAACATGAGTTGTTTAATCGATGTCATGCATCTTTACGTTCTGTTATTGA 941
Query 516 GA-GAACTTTTGGAGTTTGGAAGAAAAAATGGAGGATTATTTCTGA-TTTCCCAAGATAT 573
| ||| ||||||||||||||||||||||||||||| ||| ||| ||| | | |||||
Sbjct 942 AAGGAA-AATTGGAGTTTGGAAGAAAAAATGGAGGATTCTTTATGAATTTTCTA-GATAT 999
Query 574 AATGTTCACATTCAAAAAAGAGTAGTAATGGCTACAGTGGGATTACATAA-TTTCATCAG 632
|| || | | ||||||| ||| |||| | ||||| || || ||||||| ||| |||||
Sbjct 1000 GATATTGATGTCCAAAAAACAGTGGTAACGACTACAATGTGACTACATAACTTT-ATCAG 1058
Query 633 AATTTCAAATT-TCTCAGATGCAGA-TTTTGCAGATGTAAT-GACAGAAACAAATATAAA 689
||| || |||| | | || | ||| ||||| || ||||| | ||| |||||||| ||
Sbjct 1059 AATGTCGAATTATTTT-GACG-AGAATTTTGTTGAAGTAATAGG-AGATACAAATATCAA 1115
Query 690 CAACGGTGATTT-TGAGCATGATGTATG-TGACATGGATGCA-ACAGAG-T-TAGCAGAT 744
|||| | | || |||| ||||| || | |||| | | | | | || | | || | |||
Sbjct 1116 CAACA-TAAATTCTGAGAATGATCTA-GATGACC-GAA-G-AGA-AGTGGTATACCTGAT 1169
Query 745 GGAGAAT-ATATGACGCAA-ATAAGAGACAATATTGCAAATATGTTATGGGGAAATCAAA 802
||| ||| ||||| | || |||||||| |||||||| |||||||||||| ||||||||
Sbjct 1170 GGA-AATCATATGGCAAAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 1228
> AT5G28073.1 | Symbols: | transposable element gene | chr5:10085103-10085726
REVERSE LENGTH=624
Length=624
Score = 130 bits (70), Expect = 2e-29
Identities = 135/166 (81%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 343 TATTATCTTGTTGATTCTGGTTATCCAAACAAACAAGAGTTT-TTGGCTCCTTATAGATC 401
|||||| | |||||||||||||||||||||||||||| ||| ||| |||| ||||||||
Sbjct 335 TATTATGTAGTTGATTCTGGTTATCCAAACAAACAAGTTTTTCTTG-CTCCGTATAGATC 393
Query 402 ATCACGAAACCGAG-TTGTGAGATATCATATGTCACAATTCT-ATTCTGGTCCTCCTCCA 459
|||||||| || || | | ||||||||||||||||| | | ||||||||||||
Sbjct 394 TTCACGAAATA-AGGTTATTCGGTATCATATGTCACAATT-TGAAAATGGTCCTCCTCCT 451
Query 460 AGGAATAAACATGAACTGTTCAACCAATGTCACGCATCTTTACGTT 505
|| |||| || ||| |||| || | |||||| |||||||||||||
Sbjct 452 AGAAATAGGCAAGAATTGTTTAATCGATGTCATGCATCTTTACGTT 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5