BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323073
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 1103 0.0
> AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr3:14946188-14948167 REVERSE LENGTH=1459
Length=1459
Score = 1103 bits (597), Expect = 0.0
Identities = 858/979 (88%), Gaps = 37/979 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAGAAA-CACGATTGAGGTCGAATCTCTTGACGAAGAAGATGATTTCCTACTAGA 59
||| ||| ||| ||||||| ||| |||||||||||||||||||| |||||||||||| |
Sbjct 71 ATGAAGA-AAATCACGATTCCGGTAGAATCTCTTGACGAAGAAGACGATTTCCTACTACA 129
Query 60 AGTCGCCGCAATTGAAGCTGAAGCGGCAGCGAAACGCCCTAGGGTTTCTTCTATACCGGA 119
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 130 ACTCGCCGCAATTGAAGCTGAAGCAGCAGCGAAACGCCCTAGGGTTTCTTCTATACCGGA 189
Query 120 AGGACCATACATGGCGGCTCTAAAGGGAAGCAAAAGTGAGCAATGGCAGCAAAGTCCGTT 179
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 190 AGGACCATACATGGCGGCTCTAAAAGGAAGCAAAAGTGATCAATGGCAGCAAAGTCCATT 249
Query 180 AAATCCCGCCTCTAAATCTCGCAGTGTTGCTGTTACCACCGGCGGTTTTCAAAGATCAGA 239
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 250 AAATCCCGCCTCTAAATCTCGCAGCGTCGCTGTTACCACCGGCGGTTTTCAAAGATCAGA 309
Query 240 CGGAGGAGG---CGTCGCCGGTGAACAGGATTTTCCGGAGAAGAGTTGTCCCTGTGGAGT 296
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 310 CGGAGGAGGAGGCGTCGCCGGTGAACAAGATTTTCCGGAAAAGAGTTGTCCCTGTGGAGT 369
Query 297 TGGTCTTTGTTTGGTTCTTACTTCAACTACACCGAAGAATCCAGGACGCAAATTCTACAA 356
|||| | |||||| |||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 370 TGGTATCTGTTTGATTCTTACTTCAAATACACCGAAGAATCCAGGTCGCAAATTCTACAA 429
Query 357 ATGTCCCAATAGAGAGGAAAACGGAGGTTGTGGATTTTTCCAATGGTGTGATGCGGTTCA 416
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 430 GTGTCCCAATAGAGAGGAAAACGGTGGTTGTGGATTTTTCCAGTGGTGTGATGCGGTTCA 489
Query 417 GTCTTCTGGAACTACTACT-C-A-TAGT--TA--T--GGAAACACTAATGATTCTAAGTT 467
|||||||||||||| |||| | | |||| || | |||||| ||||||| |||||||
Sbjct 490 GTCTTCTGGAACTAGTACTACTACTAGTAATAGCTATGGAAACGGTAATGATACTAAGTT 549
Query 468 CCCAGATCATCAATGTCCGTGTGGTGCGGGATTGTGCCGTGTTTTGACTGCGAAAACAGG 527
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 550 CCCGGATCATCAGTGTCCGTGTGGTGCGGGTTTGTGCCGTGTGTTGACTGCGAAAACAGG 609
Query 528 GGAAAATGTTGGCCGGCAGTTTTATCGCTGTCCTGTTTTGGAGGGCTCTTGTGGTTTCTT 587
||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 610 CGAAAACGTTGGCCGTCAGTTTTATCGATGTCCTGTTTTTGAGGGCTCTTGTGGTTTCTT 669
Query 588 CAAATGGTGCAATGACAATGCAGTTAGCTCTCCTACATCGTATAGTGTTACCAAAAACAG 647
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 670 CAAATGGTGCAATGACAATGTAGTCAGCTCTCCTACGTCGTATAGTGTTACCAAAAACAG 729
Query 648 CAACTTAGGTGACTCAGATACCAGAGGATATCAAACTGC-AAAGACGGGCGCGCCCTGTT 706
|||||| |||||||||||||||||||||||||||| ||| ||| |||||| |||||||||
Sbjct 730 CAACTTTGGTGACTCAGATACCAGAGGATATCAAAATGCGAAA-ACGGGCACGCCCTGTT 788
Query 707 ATAAATGTGGTAAAGAAGGACACTGGGCGAGAGACTGCACCGCTCAATCTGGCAATCCGA 766
|||||||||| |||||||| |||||||| ||||| ||||| | ||| |||| | | |
Sbjct 789 ATAAATGTGGGAAAGAAGGGCACTGGGCAAGAGATTGCACTGTTCAGTCTG--A-T---A 842
Query 767 CGTATGAAGCAGGCCAAGTGAAGTCATCC-TCTTCAAG-TGGAGAATGTTACAAATGCGG 824
|| | | | ||| || ||||| | | ||| || | |||||| |||| ||||||||
Sbjct 843 CG---G--G-A--CCA-GTAAAGTC-TACATCTGCA-GCTGGAGATTGTTTTAAATGCGG 891
Query 825 GAAGCAAGGACATTGGGCGAAAGACTGCACCGGTCAATCTGGTGATCCACA-GTTTCAAT 883
|||| ||| || ||| ||| ||| ||||| | |||||||||| |||| || || | ||
Sbjct 892 AAAGCCAGGGCACTGGTCGAGAGATTGCACTGCTCAATCTGGTAATCC-CAAGTATGAAC 950
Query 884 CAAGGCAAGCAAAGTCCACAACCTCAGGTGGAGATTGTTACAAATGCGGAAAACCAGGAC 943
|| ||||| ||||| || | ||| ||||||| |||||||||||||| || | |||||
Sbjct 951 CAGGGCAAATGAAGTCGTCATCTTCAAGTGGAGAATGTTACAAATGCGGGAAGCAAGGAC 1010
Query 944 ATTGGGCAAGAGATTGCAC 962
||||| | ||||| |||||
Sbjct 1011 ATTGGTCGAGAGACTGCAC 1029
Score = 394 bits (213), Expect = 9e-109
Identities = 280/313 (89%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 703 TGTTATAAATGTGGTAAAG-AAGGACACTGGGCGAGAGACTGCACCGCTCAATCTGGCAA 761
|||| |||||| || |||| ||| |||||| ||||||| ||||| ||||||||||| ||
Sbjct 878 TGTTTTAAATGCGG-AAAGCCAGGGCACTGGTCGAGAGATTGCACTGCTCAATCTGGTAA 936
Query 762 TCCGACGTATGAAGCAGGCCAAGTGAAGTCATCCTCTTCAAGTGGAGAATGTTACAAATG 821
||| | ||||||| |||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 937 TCCCAAGTATGAACCAGGGCAAATGAAGTCGTCATCTTCAAGTGGAGAATGTTACAAATG 996
Query 822 CGGGAAGCAAGGACATTGGGCGAAAGACTGCACCGGTCAATCTGGTGATCCACAGTTTCA 881
||||||||||||||||||| ||| ||||||||||||||||||| || ||| ||| |||||
Sbjct 997 CGGGAAGCAAGGACATTGGTCGAGAGACTGCACCGGTCAATCTAGTAATCAACAATTTCA 1056
Query 882 ATCAAGGCAAGCAAAGTCCACAACCTCAGGTGGAGATTGTTACAAATGCGGAAAACCAGG 941
|||| |||||||||| |||||| ||||| ||||||||| ||||||||||||||| ||||
Sbjct 1057 ATCAGGGCAAGCAAAATCCACATCCTCAACTGGAGATTGCTACAAATGCGGAAAAGCAGG 1116
Query 942 ACATTGGGCAAGAGATTGCACTTCGGCTGCTCAAACTACAAACACTCCAGGCAAAAGACA 1001
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1117 ACATTGGTCAAGAGATTGCACTTCCCCTGCTCAAACTACAAACACTCCAGGCAAAAGACA 1176
Query 1002 GAGGCAGTACTAG 1014
|||||||||||||
Sbjct 1177 GAGGCAGTACTAG 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5