BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323077
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43180.1 | Symbols: | RING/U-box superfamily protein | chr3... 342 2e-93
AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zin... 183 1e-45
> AT3G43180.1 | Symbols: | RING/U-box superfamily protein | chr3:15178043-15178937
FORWARD LENGTH=576
Length=576
Score = 342 bits (185), Expect = 2e-93
Identities = 297/345 (86%), Gaps = 31/345 (9%)
Strand=Plus/Plus
Query 187 TGCGTGAAACGACATATAGAAGCGAGGCTACTCGAGGGACGTGTACCGAGATGTCCTGAT 246
||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 256 TGCGTTAAACAACATATAGAATCGAGGCTACTCGAGGGATGTGTACCGAGATGTCCTCAT 315
Query 247 TATCAATGCGAGTCTAAGCTAACTTTTAGAAGTTGTGCTAATCTTTTGACACCT-AAACT 305
|||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 316 GATCAATGCGAGTATAAGCTAACATTTAGAAGCTGTGCTAATCTTTTGACACCTAAAACT 375
Query 306 AAAAGCGATGTGCTCGGCTTTAATGTCGGTAACAGAGCTCTCTATATCTACTCAAGA-AG 364
||||||||| ||| | | | | | | || | ||||||||||| |
Sbjct 376 AAAAGCGAT-AGCT---C--T-A------T-----A--TATC--T-TCTACTCAAGACA- 411
Query 365 CTGAAGTTAGGAGATGTTGTGTCAAATGCAGTGAACCCTTTTGCATCAACTGCAAAGTTC 424
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 412 CTCAAGTTAGGAGATGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTC 471
Query 425 CATGGCATAGTGACTTGTCATGCGGTGATTACAAGAGATTGGGTGTGGATATTCGTTTTG 484
||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 472 CATGGCATAGTGACTTGTCATGCGGTGATTACAAGAG---G--TGTGGCTATTCGTTTTG 526
Query 485 TTACACATGTGGTACCGAATGGAAGCGAGGAGGTTGCACTCACCG 529
|||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 527 CTACACATGTGGTGCCGAATGGAAGCAAGGAGGTTGCACTCACCG 571
> AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041
Score = 183 bits (99), Expect = 1e-45
Identities = 141/161 (88%), Gaps = 3/161 (2%)
Strand=Plus/Plus
Query 311 CGATGTGCTCGGCTTTAATGTCGGTAACAGAGCTCTCTATATCTACTCAAGAAGCTG-AA 369
||| |||||||| ||||||||| ||| |||||||||| ||| ||| |||||| || ||
Sbjct 734 CGAGGTGCTCGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAAGATGTAA 793
Query 370 GT--TAGGAGATGTTGTGTCAAATGCAGTGAACCCTTTTGCATCAACTGCAAAGTTCCAT 427
|| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 794 GTACTAGGACTTGTTGTGTTAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGT 853
Query 428 GGCATAGTGACTTGTCATGCGGTGATTACAAGAGATTGGGT 468
|||||||| |||||||||||| |||||||||||||||||||
Sbjct 854 GGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGT 894
Score = 167 bits (90), Expect = 1e-40
Identities = 118/131 (90%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 186 GTGCGTGAAACGA-CATATAGAAGCGAGGCTACTCGAGGGACGTGTACCGAGATGTCCTG 244
||||||||||| | ||||||||| || ||||||||||||| ||||||||||||||| ||
Sbjct 543 GTGCGTGAAAC-ATTATATAGAAGTGAAGCTACTCGAGGGAGGTGTACCGAGATGTCTTG 601
Query 245 ATTATCAATGCGAGTCTAAGCTAACTTTTAGAAGTTGTG-CTAATCTTTTGACACCTAAA 303
|||||||||||||||||||||||||| ||| |||||||| | |||||||| |||||||||
Sbjct 602 ATTATCAATGCGAGTCTAAGCTAACTCTTACAAGTTGTGGC-AATCTTTTAACACCTAAA 660
Query 304 CTAAAAGCGAT 314
||||| |||||
Sbjct 661 CTAAAGGCGAT 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5