BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323081

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15351.1 | Symbols:  | unknown protein; Has 50 Blast hits to...   776    0.0  


> AT3G15351.1 | Symbols:  | unknown protein; Has 50 Blast hits 
to 50 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa 
- 7; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:5176059-5177648 FORWARD 
LENGTH=688
Length=688

 Score =  776 bits (420),  Expect = 0.0
 Identities = 480/509 (94%), Gaps = 4/509 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGTTGGATCCAAAGAAGTTTGTTGCACTATTGGACAAAATTGAAGCTGAAGCTGAT  60
            ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  74   ATGGATTTGGATCCAAAGAAGTTTGCTGCACTATTGGACAAAATTGAAGCTGAAGCTGAT  133

Query  61   GAGTTTCT-TCTAGCTCGAAACCAGATGGTGGAGAATGACAAGGAGAGGAATGCAAACCG  119
            |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  134  GAGTTTCTAT-TAGCTCGAAATCAGATGGTGGAGAATGACAAGGAGAGGAATGCAAACCG  192

Query  120  AGAGGCTCTTACAGCACTTAGGAAGAGAGCTCGGACAACAAAGACTAGTGTTCT-TACTC  178
            |||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||
Sbjct  193  AGAGGCTCTTACAGCACTAAGGAAGAGAGCTCGGACAACAAAGACTAGTGTTATGT-CTC  251

Query  179  CATTCGATTCTATGATGAAAGATATACATGTGAGCTCAACGAAACCTTTGGTCCAAGAAG  238
            |||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct  252  CATTTGATTCTATGATGAAGGATATCCATGGGAGCTCAACGAAACCTTTGGTCCAAGAAG  311

Query  239  TTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACTTGGATGATGCTCCCAGGAG  298
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  312  TTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACCTGGATGATGCTCCCAGGAG  371

Query  299  CTGATCTTTTTGCTGCGATTCCGTTTCATGCTTTGCATACAATGCTTGAGAAAGATGAAG  358
            |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct  372  CTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCTAGAGAAAGATGAAG  431

Query  359  AGAAAATGGAGTTTGAATCGAAGAAATTGCAGAGCCTAGTGAAGGAGAAAGCTCTGTTTA  418
            ||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct  432  AGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGAAAAAGCTCTGTTTA  491

Query  419  TATCGGAACTTGGGGATCTTGCTGATAATATTTCTCCAGGCCTTATCAGATCGTTGGTGG  478
            |||||||||| |||| ||||||||||  ||||||||| ||| ||||||||||||||||||
Sbjct  492  TATCGGAACTAGGGGCTCTTGCTGATGGTATTTCTCCTGGCGTTATCAGATCGTTGGTGG  551

Query  479  CTTTAAAGGACAAACCTTTAGTTAAGTAG  507
            ||||| |||||||||||| ||||||||||
Sbjct  552  CTTTAGAGGACAAACCTTAAGTTAAGTAG  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5