BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323091
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 2444 0.0
AT3G43490.1 | Symbols: | Zinc knuckle (CCHC-type) family prote... 379 4e-104
AT5G36240.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 276 6e-73
> AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr3:15509621-15512574 FORWARD LENGTH=2107
Length=2107
Score = 2444 bits (1323), Expect = 0.0
Identities = 1570/1683 (93%), Gaps = 41/1683 (2%)
Strand=Plus/Plus
Query 1 ATGCCGAGGCATAATAAAGATGAAAAATTTGTTTTTGATGACGGAGAAGACGAGGACAGA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 133 ATGCCGAGGCAGAATAAAGATGAAAAATTTGTTTTTGATGACGGAGAAGACGAAGACAGA 192
Query 61 GAAGATCCAGTATCCATTAAAGTTGTCgatggtgaa-gatgaagatgaagatgatgatga 119
|||||||||||| |||||| || ||||| || | ||||| ||||||||||||||
Sbjct 193 GAAGATCCAGTAGCCATTACAGAAGTCGA----CAACGGCGAAGAAGAAGATGATGATGA 248
Query 120 agctaatgaagatcttagcttgaagatattagagaaagCATTATCGAGGCGTGATGTTGG 179
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 249 AGCTAATGAAGATCTAAGCTTGAAGATTTTAGAGAAAGCATTATCGAGGCGTGATGTTGG 308
Query 180 GAACAAGCTTGATTCTGATCTCT-CT--GATTCTGGTGTAGTAAATACTGTGATGGTTAA 236
||||||||||||||||||||||| || |||||||||||||| | |||||||||||||||
Sbjct 309 GAACAAGCTTGATTCTGATCTCTCCTCCGATTCTGGTGTAGTTAGTACTGTGATGGTTAA 368
Query 237 TGGAGGAAAGTCTAAGGTTAAAAAATATGAGAGTAATAAGAAGATGAAGAGAAATAAGCT 296
||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 369 TGGAGTAAAGTCTAAGGTTAAAAAGTCTGAGAGTAGTAAGAAGATGAAGAGAAATAAGCT 428
Query 297 TGAAGCTGCCCATGAAATTCCTATTGTTTGGAAAGACCAAGATGAAGAGAAAGTTGTGGA 356
|||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 429 TGAAGCTGACCATGAAATTCCTATTGTTTGGAATGACCAAGATGAAGAGAAAGTGGTGGA 488
Query 357 GGAGGTAGTAAAAGGTGAAGGAGAGGATGATGAGGTTGACAGATCTGATGAACCGAAAAC 416
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 489 GGAGATAGTAAAAGGTGAAGGAGAGGATGATGAGGTTGAGAGATCTGATGAACCAAAAAC 548
Query 417 TGAAGAAACATCTAGCAATTTGGTTCTGAAAAAGCTTCTTCGTGGAGCAAGATACTTTGA 476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TGAAGAAACAGCTAGCAATTTGGTTCTGAAAAAGCTTCTTCGTGGAGCAAGATACTTTGA 608
Query 477 CCCTCCTGATGCTGGTTGGGTGAGTTGTTATAGTTGTGGGGAGCAAGGTCATACAAGTTT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CCCTCCTGATGCTGGTTGGGTGAGTTGTTATAGTTGTGGGGAGCAAGGTCATACAAGTTT 668
Query 537 CAATTGTCCAACTCCTACCAAGCGTAGAAAGCCTTGCTTTATATGTGGGAGTTTGGAACA 596
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CAATTGTCCAACTCCTACTAAGCGTAGAAAGCCTTGCTTTATATGTGGGAGTTTGGAACA 728
Query 597 TGGTGCAAAGCAGTGTTCAAAGGGACATGATTGTTATATATGCAAAAAAGGTGGACATCG 656
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 729 TGGTGCAAAGCAGTGTTCAAAGGGACATGATTGTTATATATGCAAAAAAACTGGACATCG 788
Query 657 AGCTAAAGATTGTCCCGATAAGTATAAAAACGGGTCTAAAGGAGCTGTATGTTTAAGATG 716
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 789 AGCTAAAGATTGTCCGGATAAGTACAAAAACGGGTCTAAAGGAGCTGTATGTTTAAGATG 848
Query 717 TGGAGACTTTGGTCATGACATGATTTTGTGCAAGTATGAGTACTCTCAGGAAGATTTGAA 776
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 849 TGGAGACTTTGGACATGACATGATTTTGTGCAAGTATGAGTACTCTAAGGAAGATTTGAA 908
Query 777 GGATATACAATGCTATGTCTGTAAAAGCTTTGGCCATCTATGCTGTGTCGAACCTGGTAA 836
|||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 909 GGATGTACAATGCTATATCTGTAAAAGCTTTGGCCATCTATGCTGTGTTGAACCTGGTAA 968
Query 837 TTCACCGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGGGTCATACTGGACTGGC 896
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 969 TTCACTGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGGGTCATAGTGGACTGGC 1028
Query 897 ATGTGGTAGACACTACGAAGAAAGAAACGAAAATGATTCTTCCAGCTT-A-A--G-CTTT 951
||||||||||||||| |||||||| ||||||||||||||| ||| || | | | ||||
Sbjct 1029 ATGTGGTAGACACTATGAAGAAAGCAACGAAAATGATTCTGCCA-CTCCAGAAAGGCTTT 1087
Query 952 CCAGAAAACAACAGGGAAGCCAGTGAATGCTATAGGTGTGGGGAAGAAGGGCATTTCGCA 1011
| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TTA-A---CAGTAGGGAAGCCAGTGAATGCTATAGGTGTGGGGAAGAAGGGCATTTCGCA 1143
Query 1012 CGTGAATGCCCGAATTCGTCGAGCATAAGCACTTCACAGGGCAGAGAGTCACAAAGTTTA 1071
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1144 CGTGAATGTCCGAATTCGTCGAGCATAAGCACTTCACATGGCAGAGAGTCACAAACTTTA 1203
Query 1072 TGCTACAGATGTAATGGAGCAGGACATTTCGCTCGTGAATGCCCCAATTCCTCCCAGGTT 1131
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TGCTACAGATGTAATGGATCAGGACATTTCGCTCGTGAATGCCCCAATTCCTCCCAGGTT 1263
Query 1132 TCTAAGAGGGACCGTGATACATCTACACCATCACATAAATCTCGCAAGAAAAATAAAGAG 1191
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1264 TCTAAGAGAGACCGTGAAACATCTACAACATCACATAAATCTCGCAAGAAAAACAAAGAG 1323
Query 1192 AACTCGGAACACGATTCTACTCCCCATGAATCCAATGgaaagac---gaagaagaagaag 1248
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1324 AACTCAGAACACGATTCTACTCCCCATGAGTCCAATGGAAAGACAAAGAAGAAGAAGAAG 1383
Query 1249 aagaaaacacataaagaagaaCAGCCCCAGACTTCACCAAGGAAACGAAAACACAGAGGC 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AAGAAAACACATAAAGAAGAACAGCCCCAGACTTCACCAAGGAAACGAAAACACAGAGGC 1443
Query 1309 GGTTGGATCACAGAGGAACCGGAAGAAGAATCTTTCCAAAGAGGAAAGACGAGAAGGCCA 1368
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1444 GGTTGGATCACAGAGGAACCGGAAGAAGAATCTTTCCAAAGAGGAAAGATGAGAAGGCCA 1503
Query 1369 AAGTCTCCCATTACACCATCGGGTTATAACAAGTCACCCTCTACACATATGGGTCATAAC 1428
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1504 AAGTCTCCCATTACACCATCGGGTTATAACAGGTCACCCTCTACACATATTGGTCATAAC 1563
Query 1429 TATAGATCTCCAAAATTCAATTCTGGTGGGCATTTCCCGGGATCTCAGTCTAGTAGGCAT 1488
|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1564 TATAGATCGCCAAAATTCAATTCTGGTGGGCATTACCCGGGTTCTCAGTCTAGTAGGCAT 1623
Query 1489 CACTCGGGTCCTTCACCATCAAGGTGGCAGCCTTCTTATCCTCCTTCtcatcatcatcag 1548
||||||||||||||||| |||||||||||||||||| ||| | ||||||||
Sbjct 1624 CACTCGGGTCCTTCACCTTCAAGGTGGCAGCCTTCTCATC---------AGCATCATCA- 1673
Query 1549 catcatcatcatcatcatcatcagcatcatcatcatcagaatcaAAGTTATGGAAC-TGC 1607
||||||||| |||| | ||| |||||||||||||||||| ||||||| ||| |||
Sbjct 1674 --TCATCATCAGCATC-T--TCA---TCATCATCATCAGAATCACAGTTATG-AACCTGC 1724
Query 1608 ACCACCAAGGTATGGCAGAGCTCACCACTATGGCGAGTTTGCAGGGAACTATGAACGGTG 1667
|||||||||| |||| |||||| ||| |||| | ||||||||||||||||||||||||||
Sbjct 1725 ACCACCAAGGCATGGAAGAGCTAACCGCTATAGTGAGTTTGCAGGGAACTATGAACGGTG 1784
Query 1668 GTA 1670
|||
Sbjct 1785 GTA 1787
> AT3G43490.1 | Symbols: | Zinc knuckle (CCHC-type) family protein
| chr3:15398859-15400079 FORWARD LENGTH=783
Length=783
Score = 379 bits (205), Expect = 4e-104
Identities = 423/520 (81%), Gaps = 48/520 (9%)
Strand=Plus/Plus
Query 112 gatgatgaagctaatgaagatcttagcttgaagatattagagaaagCATTATCGAGGCGT 171
||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct 67 GATGATGAAGCTAATGAAGATCTAAGATTGAAGATATTAGAGAAAGCTTTTTCGAGGCGT 126
Query 172 GATGTTGGGAACAAGCTTGATTCTGATCTCT-C-T-GATTCTGGTGTAGTAAATACTGTG 228
|||||| |||||||||||||||||||||| | | ||| |||||||||| | |||||||
Sbjct 127 AATGTTGATAACAAGCTTGATTCTGATCTCTCCTTCGATCCTGGTGTAGTTAGTACTGTG 186
Query 229 ATGGTTAATGGAGGAAAGTC-TA--AGGTTAAAAAATATGAGAGTAATAAGAAGATGAAG 285
|||||||||||||||||||| | | |||||||| | | ||||||||||||||||||||
Sbjct 187 ATGGTTAATGGAGGAAAGTCGGAGGAAGTTAAAAACTCTAAGAGTAATAAGAAGATGAAG 246
Query 286 AGAAATAAGCTTGAAGCTGCCCATGAAA-T-T--CCTATTGTTTGGAAAGACCAAGATGA 341
||||||||||||||||||||| |||||| | | || ||||| |||||||| |
Sbjct 247 AGAAATAAGCTTGAAGCTGCCAATGAAATTGTAACCCATTGTGTGGAAAGA-C------- 298
Query 342 AGAGAAAGTTGTGGAGGAGGTAGTAAAAGGTGAAGGAGAGGATGATGAGGTTGACAGATC 401
| || | | ||||| || | | ||| | ||||||| | | | | | |||
Sbjct 299 A-AG--A----T-GAGGA--TA--ACATGGT----G-GAGGATG-T-A-G-T-A-AGAGG 335
Query 402 TGATGAACCGAAAACTGAAGAAACATCTAGCAATTTGGTTCTGAAAAAGCTTCTTCGTGG 461
||| ||| ||| | || ||||||| ||||||||| |||| ||| |||||||||||||||
Sbjct 336 TGAAGAA--GAAGA-TGGAGAAACAACTAGCAATTCGGTTATGACAAAGCTTCTTCGTGG 392
Query 462 AGCAAGATACTTTGACCCTCCTGATGCTGGTTGGGTGAGTTGTTATAGTTGTGGGGAGCA 521
|||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||||| |
Sbjct 393 AGCAAGATACTTTGACCCTCTTGATGCTGGTTGGGTAACTTGTTATAGCTGTGGGGAGAA 452
Query 522 AGGTCATACAAGT-TTCAATTGTCCAACTCCTACCAAGCGTAGAAAGCCTTGCTTTATAT 580
|| ||||| || | || | ||||||||||| |||||| |||| ||| | ||||||||||
Sbjct 453 AGATCATATAACTGTT-AGTTGTCCAACTCTTACCAATTGTAGGAAGTCGTGCTTTATAT 511
Query 581 GTGGGAGTTTGGAACATGGTGCAA-AGCAGTGTTCAAAGG 619
| | |||||||| |||||||||| | |||||| ||||||
Sbjct 512 GCGCTAGTTTGGAGCATGGTGCAAGA-CAGTGTACAAAGG 550
> AT5G36240.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr5:14277972-14278924 REVERSE LENGTH=765
Length=765
Score = 276 bits (149), Expect = 6e-73
Identities = 193/214 (90%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 703 GTATGTTTAAGATGTGGA-GACTTTGGTCATGACATGATTTTGTGCAAGTATGAGTACTC 761
|||||||||||||||||| || ||||| |||||||||| ||||||||||||||||||||
Sbjct 79 GTATGTTTAAGATGTGGAGGA-TTTGGACATGACATGACCTTGTGCAAGTATGAGTACTC 137
Query 762 TCAGGAAGATTTGAAGGATATAC-AATGCTATGTCTGTAAAAGCTTTGGCCATCTATGCT 820
||| |||||||||||| |||| | |||||||||||||||| ||||| || ||| |||| |
Sbjct 138 TCATGAAGATTTGAAGAATAT-CAAATGCTATGTCTGTAATAGCTTAGGGCATTTATGTT 196
Query 821 GTGTCGAACCTGGTAATTCACCGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGG 880
|| | ||||||||| || ||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 197 GTATTGAACCTGGTCATACACAGTCATGGACTGTATCTTGCTACAGATGTGGTCAACTAG 256
Query 881 GTCATACTGGACTGGCATGTGGTAGACACTACGA 914
||||||||||||||||||||||||||||||||||
Sbjct 257 GTCATACTGGACTGGCATGTGGTAGACACTACGA 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5