BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323113
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein | ... 942 0.0
AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-... 427 1e-118
AT3G44096.1 | Symbols: | transposable element gene | chr3:1585... 411 1e-113
AT3G44080.1 | Symbols: | F-box family protein | chr3:15835632-... 165 1e-39
AT3G44810.1 | Symbols: | F-box family protein | chr3:16358496-... 158 2e-37
> AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:15824938-15826391 REVERSE LENGTH=1284
Length=1284
Score = 942 bits (510), Expect = 0.0
Identities = 878/1048 (84%), Gaps = 56/1048 (5%)
Strand=Plus/Plus
Query 1 ATGGATTGTCTTCCAGATGATCTTCTTGTCCAAATCTTATCCTTCCTTCCTACGAAAGAA 60
||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||
Sbjct 1 ATGGATTGTCTTCCAGATGATCTCCTTGTCCAAATCTTATATTTACTTCCCACGAAAGAG 60
Query 61 GCTGTTTCAACCTCTCTTCTCTCAAAGAGGTGGAGGACTCTGTTTACTCTCAGTCATAAT 120
||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||| |||||
Sbjct 61 GCTGTTTCAACCTCTGTTCTCTCCAAGAGATGGAGGACTCTGTTTACTCGCAGTGATAAT 120
Query 121 CTTGACTTTGACGATCCCATCTCCGGGCGCCCCGAAGATATCCGAAAAAGTTTCGGTGAT 180
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 121 CTTGACTTTCACGATCCCATCTCCGGGCGCCCCGAAGATATCCTAAAGAGTTTCAATGAT 180
Query 181 TTTGTGGACAGTTCATTGGCTTTCCAAGGCGGTAAACATATAAAGAAGTTCTCACTTAAA 240
|| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 181 TTCGTGGACAGTTCATTAGCTTTTCAAGGTGGTAAACATATAAAAAAGTTCTCACTT--- 237
Query 241 CATACTGAAATATATGAAGAAGA--AGAACATAACG---TTGACCGATGGATATGTAAGG 295
|||||| ||| || | || || | ||| || ||| ||||||| ||||| ||||| |
Sbjct 238 CATACT-AAA-AT-T-AA-AACATTTGAATATCACGTACTTGACCGCTGGATTTGTAATG 292
Query 296 CCCTGGAACACGGTGTCTCTGAGCTCCATCTACATCTACACGTAAAGTC-TAAATTGT-G 353
|||||||||||||||||||||| | || ||||||||| ||| | | | ||| || |
Sbjct 293 CCCTGGAACACGGTGTCTCTGA-----A-CTTCATCTACACCTAATG-CATGAATCGTGG 345
Query 354 --GTGGGAGTTTTCTATACCATCCAAAGTCTTCACCAGCACAACACTAGTTAAGCTGTCA 411
|||| ||||||||| ||||| ||||| |||| |||| ||||||| ||||||||||||
Sbjct 346 CCGTGGTTGTTTTCTATCCCATCTAAAGTTTTCAACAGCTCAACACTGGTTAAGCTGTCA 405
Query 412 CTGGGAACAG-GACTAGACTGCCCAAGACTTCCTCCGGATACATCTCTCCCAGCACTAAA 470
||||| | | ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 406 TTGGGATC-GAGACTATACTGCCCAAGTTTTCCTCCGGATACATCTCTCCCAGCACTAAA 464
Query 471 GGTTCTCCTCCTTGATTCAATCTTCTGGTTTAGGCATGATCAATTATCTAATGTGCTTCT 530
|||||| ||||||||||||||| | | |||| || |||||||||||||||||||| ||||
Sbjct 465 GGTTCTGCTCCTTGATTCAATC-T-T-GTTTCGGGATGATCAATTATCTAATGTGTTTCT 521
Query 531 CGCTGCATGCCCTGCACTTGAGGACTTAACCATACATTACGAGTATTATCCAGGACATTC 590
||||||||||||||||||||||||||||||||||||| || | ||| | || |
Sbjct 522 CGCTGCATGCCCTGCACTTGAGGACTTAACCATACATCAC-A--CGTAT-C---AC--CC 572
Query 591 ATACGTCATATCCAGCAAAAGCATTAAGAAACTCTCAGTTACCATTAATAGTAGTTATTA 650
|| |||||||||||||||||||||||||||||| ||| ||| | |||| ||| |||||||
Sbjct 573 ATGCGTCATATCCAGCAAAAGCATTAAGAAACTTTCACTTAGCGTTAACAGTGGTTATTA 632
Query 651 TGTTGATCAATCTAGCATTCTTACACTTGACACACCTAA-TGTTGCCGACCTCTACTACT 709
|| || | | || ||||||||||||||||| || || ||||| ||||||||||||||
Sbjct 633 TGGTGCTGG-T-TAT-ATTCTTACACTTGACACGCC-AAGTGTTGTCGACCTCTACTACT 688
Query 710 CTGATTATCCTCGGCGTAAATCTCCACGTTGTCAATTGGATTCAGTTGCAAAAGCTACAT 769
|||||| ||||||| ||| |||||| || ||| || |||||| |||| |||| |||||
Sbjct 689 CTGATTCCCCTCGGCATAACGCTCCACTTTTTCATTTAGATTCACTTGCGAAAGTTACAT 748
Query 770 TGAACCTTCATTTCTTA-AAAGATTA---TCGCCAGGTG-AAAAGTGACGCGGATGTGAC 824
|| ||||||||||| || ||| || | |||| ||||| |||| |||||| |||||||
Sbjct 749 TGGACCTTCATTTCATAGAAA-ATAACAATCGCGAGGTGCAAAA-TGACGCTGATGTGAA 806
Query 825 CGATCTCATCAGTGG-GATACGTAACGTCAAGACCCTTCACTTGACTA-TTCCGACTGTC 882
||||||| || || |||| | |||||||||||||||||||||||| ||| || |||
Sbjct 807 AAATCTCATTAG-GGAGATATGCAACGTCAAGACCCTTCACTTGACTTGTTCT-ACAGTC 864
Query 883 AAAGTGATTTTGGTATGCTGCAAAGGTGAACTACCGGTGTTCAACAACCTCGTTGATTTA 942
| ||||||| |||| ||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct 865 GAGGTGATTTCCGTATACTGCAAAGGTGGACTACCAATGTTCAACAACCTTGTTGAGTTA 924
Query 943 ATGTTTTCGAGTAAAA-GACAAGGTTGGAAAGTGCTTCTGCCTCTTCTGCTAGAGCGTTC 1001
||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||
Sbjct 925 GTGTTTTCGAGTAAAAAGG-AAGGTTGGAGAGTGCTTCTGCCTCTTCTGCTAGAGAATTC 983
Query 1002 TCCAAACCTAAAAAATCTTATTCTCTCG 1029
||||||||| ||| ||| ||||||||
Sbjct 984 TCCAAACCTTGAAACTCTGGTTCTCTCG 1011
> AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-15840759
FORWARD LENGTH=1350
Length=1350
Score = 427 bits (231), Expect = 1e-118
Identities = 430/522 (82%), Gaps = 29/522 (6%)
Strand=Plus/Plus
Query 370 CCATCCAAAGTCTTCACCAGCA-CAACACTAGTTAAGCTGTCACTGGGAACAGGACTAGA 428
|||| ||||||||||||||||| ||| ||| |||||||||||| |||||||| ||||||
Sbjct 439 CCATACAAAGTCTTCACCAGCACCAA-ACTGGTTAAGCTGTCATTGGGAACACGACTAGC 497
Query 429 CTGCCCAAGACTTCCTCCGGATACATCTCTCCCAG-CACTAAAGGTTCTCCTCCTTGATT 487
|||||||||| |||||| |||||||||||||| | | ||||| || ||||| ||||| |
Sbjct 498 CTGCCCAAGAATTCCTCAAGATACATCTCTCCCGGTC-CTAAAAGTCCTCCTACTTGAAT 556
Query 488 CAATCTTCTGGTTT-AGGCATGATCAATTATCTAATGTGCTTCTCGCTGCATGCCCTGCA 546
|| | |||||| ||| || ||||||||||| ||||| ||||||| || |||||||||
Sbjct 557 --AT-ATATGGTTTGAGG-ATAATCAATTATCTGATGTGTTTCTCGCAGCTTGCCCTGCA 612
Query 547 CTTGAGGACTTAACCATACATTACGAGTATTATCCAGGACATTCATACGTCATATCCAGC 606
||||||||||||||||||||| || | | || || | ||||| | ||||||| |||
Sbjct 613 CTTGAGGACTTAACCATACATCAC-A-TGTT-TC--GCCCATTC---C-TCATATCTAGC 663
Query 607 AAAAGCATTAAGAAACTCTCAGTTACCATTAATAGTAGTTATTATGTTGATCAATCTAGC 666
|||| | |||||||||||||||||||||||||| ||| ||||||||||||| |||| |
Sbjct 664 AAAAACCTTAAGAAACTCTCAGTTACCATTAATTTTAGCTATTATGTTGATCGTTCTA-C 722
Query 667 A-TTCTTACACTTGACACACCTAATGTTGCCGACCTCTACTACTCTGATTATCCTCGGCG 725
| |||||||||||||||| || ||||||| |||||||||||||||||||| ||||||||
Sbjct 723 AATTCTTACACTTGACACGCCGAATGTTGTCGACCTCTACTACTCTGATTTTCCTCGGCC 782
Query 726 TAAATCTCCACGTTGTCAATTGGATTCAGTTGCAAAAGCT-ACATTGAACCTTCATTTCT 784
|| | |||||| |||||| || ||||| | || |||| | | | || ||||||||| ||
Sbjct 783 TATAGCTCCACATTGTCATTTAGATTCTCTAGCCAAAGTTGA-ACTGGACCTTCATTCCT 841
Query 785 TAAAAGAT--TA-TCGCCAGGTG-AAAAGTGACGCGGATGTGACCGATCTCATCAGTGGG 840
|| ||||| || ||||||||| |||| |||||||||||| | ||||||| |||| |
Sbjct 842 TAGAAGATGATAGTCGCCAGGTACAAAA-TGACGCGGATGTAAAAAATCTCATTAGTGAG 900
Query 841 ATACGTAACGTCAAGACCCTTCACTTGACT-ATTCCGACTGT 881
||||| || || |||||||||||||| ||| |||| | ||||
Sbjct 901 ATACGCAATGTTAAGACCCTTCACTTAACTTATTCTG-CTGT 941
Score = 196 bits (106), Expect = 3e-49
Identities = 132/144 (92%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 1 ATGGATTGTCTTCCAGATGATCTTCTTGTCCAAATCTTATCCTTCCTTCCTACGAAAGAA 60
||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct 76 ATGGATTGTCTTCCAGATGATCTCCTTGTCCAAATCTTATACTTCCTTCCCACGAAAGAA 135
Query 61 GCTGTTTCAACCTCTCTTCTCTCAAAGAGGTGGAGGACTCTGT-TTACTCTCAGT-CATA 118
||| | ||||||||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 136 GCTATATCAACCTCTCTTCTCTCAAAGAGGTGGAGGACTCTGTATT-CTCTC-GTGCATA 193
Query 119 ATCTTGACTTTGACGATCCCATCT 142
|||||||||| |||||| |||||
Sbjct 194 ATCTTGACTTGGACGATTACATCT 217
> AT3G44096.1 | Symbols: | transposable element gene | chr3:15859368-15863166
REVERSE LENGTH=3799
Length=3799
Score = 411 bits (222), Expect = 1e-113
Identities = 420/513 (82%), Gaps = 24/513 (5%)
Strand=Plus/Plus
Query 370 CCATCCAAAGTCTTCACCAGCACAACACTAGTTAAGCTGTCACT-GGGAACAGGACTAGA 428
|||||| |||| ||||||||||||||||| |||||||||||| | ||||| | | | |
Sbjct 259 CCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-AACCCAACA 317
Query 429 CTGCCCAAGA-CTTCCTCCGGATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGATT 487
| | | || || |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 318 C-ATCTATGAGTTTTCTCCTGATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTTGATT 376
Query 488 CAATCTTCTGGTTTAGG-CATGATCAATTATCTAATGTGCTTCTCGCTGCATGCCCTGCA 546
| | |||||||| || || ||| |||| | ||||| || ||||||| |||||||||
Sbjct 377 C--T-ATCTGGTTTTGGAAAT-ATCCATTAGCAAATGTATTTTTCGCTGCTTGCCCTGCA 432
Query 547 CTTGAGGACTTAACCATACATTACGAGT-ATTATCCAGGACA-TTCATACGTCATATCCA 604
||||||||||||||||||| |||| | | ||| | |||| | ||||||||| |||||||
Sbjct 433 CTTGAGGACTTAACCATACGTTAC-AATAATTTTAGAGGA-AGTTCATACGTTATATCCA 490
Query 605 GCAAAAGCATTAAGAAACTCTCAGTTACCATTAATAGTAGTTATTATGTTGATCAATC-T 663
||||||||||||||||||||||||||| || || ||||||| ||||| || ||| || |
Sbjct 491 GCAAAAGCATTAAGAAACTCTCAGTTATCAATAGCAGTAGTTGTTATGATGGTCA-TCAT 549
Query 664 AGCATTCTTACACTTGACACACCTAATGTTGCCGACCTCTACTACTCTGATTATCCTCGG 723
||| || |||||||||| ||||| ||||||| |||| |||||||||||| || || || |
Sbjct 550 AGCGTTATTACACTTGATACACCCAATGTTGTCGACTTCTACTACTCTGGTTTTCTTCAG 609
Query 724 CGTAAATCTCCACGTTGTCAATTG-GATTCAGTTGCAAAAGCTACATTGAACCTTCATTT 782
| |||| ||||| |||| |||| |||||| |||| ||||||||| || ||||||||||
Sbjct 610 CCTAAAGATCCACATTGT-AATTTAGATTCACTTGCCAAAGCTACACTGGACCTTCATTT 668
Query 783 CTTAAAAGATTA---TCGCCAGGTG-AAAAGTGACGCGGATGTGACCGATCTCATCAGTG 838
|||| ||||| | | |||||||| |||| |||||||||||| | ||||||||| |
Sbjct 669 CTTAGAAGATGACAATAGCCAGGTGCAAAA-TGACGCGGATGTAAAAAATCTCATCAA-G 726
Query 839 G-GATACGTAACGTCAAGACCCTTCACTTGACT 870
| ||||| ||||||||||||||||||||||||
Sbjct 727 GAGATACACAACGTCAAGACCCTTCACTTGACT 759
Score = 259 bits (140), Expect = 4e-68
Identities = 190/214 (89%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 1029 GTTTGTGGGGATTCCAATTCCCTTGAATAACCAAATAAAGAT-TCTGCGTATCATGCAGT 1087
|||||| ||||||| ||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 1462 GTTTGTAGGGATTCAAATTCCCCCAAATAACCAAATAAAGATGT-TGCGTATCATGCAGT 1520
Query 1088 ATCAAGGAAGTGAAACAGAGCTGAAACACATAAGCCATTTCTTACTGAATATGGAGTGTC 1147
| |||||||||| ||| | | |||||||||| |||||||||||| |||||||||||||||
Sbjct 1521 ACCAAGGAAGTGCAACCGTGTTGAAACACATTAGCCATTTCTTAATGAATATGGAGTGTC 1580
Query 1148 TTGAAGTTGTGGAAGTTAACGTTGCACCTACACTGTATGACCCCAAAAAAG-TGCGGCTC 1206
||||||||||| ||||| | |||||||||||| || |||||| | |||||| ||| ||||
Sbjct 1581 TTGAAGTTGTGAAAGTTTATGTTGCACCTACAATGGATGACCTC-AAAAAGATGCAGCTC 1639
Query 1207 ACAGAGGATCTGTTGAAGCTTCCCACAGCTTCAT 1240
|||||||||||||||||||||||| |||||||||
Sbjct 1640 ACAGAGGATCTGTTGAAGCTTCCCGCAGCTTCAT 1673
Score = 217 bits (117), Expect = 3e-55
Identities = 141/152 (93%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 17 ATGATCTTCTTGTCCAAATCTTATCCTTCCTT-CCTACGAAAGAAGCTGTTTCAACCTCT 75
|||||||||||||| ||||||||||||||||| || || ||| |||||| ||||||||||
Sbjct 1 ATGATCTTCTTGTCAAAATCTTATCCTTCCTTGCC-ACAAAACAAGCTGCTTCAACCTCT 59
Query 76 CTTCTCT-CAAAGAGGTGGAGGACTCTGTTTACTCTCAGTCATAATCTTGACTTTGACGA 134
||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 60 CTTCTCTCCAAA-AGGTGGAGGACTCTATTTGCTCTCAGTCATAATCTTGACTTTGACGA 118
Query 135 TCCCATCTCCGGGCGCCCCGAAGATATCCGAA 166
||||||||||||||| ||||||||||||||||
Sbjct 119 TCCCATCTCCGGGCGTCCCGAAGATATCCGAA 150
Score = 128 bits (69), Expect = 1e-28
Identities = 94/106 (89%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 925 AACAACCTCGTTGATTTAATGTTTTCGAGTAAAAGA-CAAGGTTGGAAAGTGCTTCTGCC 983
|||||||| ||||| ||| ||||||||||||||| | |||||| ||||||| |||||||
Sbjct 1225 AACAACCTTGTTGAGTTAGTGTTTTCGAGTAAAAAAGGAAGGTTTGAAAGTGATTCTGCC 1284
Query 984 TCTTCTGCTAGAGCGTTCTCCAAACCTAAAAAATCTTATTCTCTCG 1029
||||||||||||||||||||||||||| |||| ||| ||||||||
Sbjct 1285 TCTTCTGCTAGAGCGTTCTCCAAACCTCAAAACTCTGGTTCTCTCG 1330
> AT3G44080.1 | Symbols: | F-box family protein | chr3:15835632-15837126
REVERSE LENGTH=1164
Length=1164
Score = 165 bits (89), Expect = 1e-39
Identities = 122/137 (89%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 1 ATGGATTGTCTTCCAGATGATCTTCTTGTCCAAATCTTATCCTTCCTT-CCTACGAAAGA 59
|||||||||||||| ||||| ||||||||| |||||||||||| |||| || |||||| |
Sbjct 25 ATGGATTGTCTTCCTGATGAACTTCTTGTCGAAATCTTATCCTCCCTTACC-ACGAAACA 83
Query 60 AGCTGTTTCAACCTCTCTTCTCTCAAAGAGGTGGAGGACTCTGT-TTACTCTCAGT-CAT 117
||| ||||||||||||||||||||||||||||||| |||||| | || ||||| || |||
Sbjct 84 AGCAGTTTCAACCTCTCTTCTCTCAAAGAGGTGGAAGACTCTATATT-CTCTC-GTGCAT 141
Query 118 AATCTTGACTTTGACGA 134
||||||||| |||||||
Sbjct 142 AATCTTGACATTGACGA 158
> AT3G44810.1 | Symbols: | F-box family protein | chr3:16358496-16359983
REVERSE LENGTH=1347
Length=1347
Score = 158 bits (85), Expect = 2e-37
Identities = 436/600 (73%), Gaps = 46/600 (8%)
Strand=Plus/Plus
Query 440 TTCCTCCGGATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGATTCAATCTTCTGGT 499
||||| | ||||| | ||| || | || ||| ||||| |||||||||| | || ||||
Sbjct 473 TTCCTTCTGATACGTGTCTTCCGGTTCTTAAGATTCTCGTCCTTGATTCGA--TT-TGGT 529
Query 500 TTAGGCAT-G-ATCAA-TTATCTAATGTGCTTCTCGCTGCATGCCCTGCACTTGAGGACT 556
|| | || | || || || |||||||||||||| |||| ||||||||||||||||||||
Sbjct 530 TT--G-ATAGAATAAAGTTCTCTAATGTGCTTCTTGCTGGATGCCCTGCACTTGAGGACT 586
Query 557 TAACCATACATTACGAGTATTATCCAGGACATT-CATA-CGTCATATCCAGCAAAAGCAT 614
|||||||| | | ||| || |||||| || | | ||| | || ||||||| | |
Sbjct 587 TAACCATAGACCAAAAGTCTTTTCCAGGG--TTGCCGAACGTTGTTTCGAGCAAAACCGT 644
Query 615 TAAGAAACTCTC-AGTTACC-ATTAATAGTAGTTATTATGTT-GATCAATCTAGCATTCT 671
||||| || || | | | || |||| | | | || || ||| | | ||| | |
Sbjct 645 TAAGAGTCTATCCA-TCGTCTATAAATATTC-TGCTGAT-TTCGATTGGTTTCGCACTGT 701
Query 672 TACACTTGACACACCTAATGTTGCCGACC-TC-TACTACTCTGAT-TATCCTCGGCGTAA 728
| ||||||||||||| || ||| | ||| || | ||||||| | ||| |||||| ||
Sbjct 702 TGCACTTGACACACCAAACCTTGTC-ACCCTCCT-CTACTCT-ACCTATGCTCGGCATAG 758
Query 729 ATCTCCACGTTGTCAATTG-GATTCAGTTG-CAAAAGCTACATTGAACCTTCATTTCTTA 786
| || || ||| ||||| || || ||| ||| |||||| || | ||||||||||||
Sbjct 759 GTATCGACATTG-CAATTTAGAGTCCCTTGTCAAT-GCTACACTGGATCTTCATTTCTTA 816
Query 787 -AAAGATTATCGCCAGGTGAAAAGTGA-CGCGGATGTGACCGATCTCATCAGTG-GGATA 843
||| ||| | | | | | ||| | || ||||||| |||||||| | || || ||
Sbjct 817 GAAA-ATTGT-G--ATGAGGCTTTTGAAC-CGAATGTGACGGATCTCATGATTGCGG-TA 870
Query 844 CGTAACGTCAAGACCCTTCACTTGACTA-TTCCGACTGTCAAAG-TGATTTTGGTATGCT 901
|| || ||| ||| ||||| |||||| ||| | || | || |||||| | |||||
Sbjct 871 CGCAATGTCCAGATGCTTCATTTGACTTCTTCTG-CTA-CTGAGGTGATTTCGCAATGCT 928
Query 902 GCAAAGGTGAACTACCGGTGTTCAACAACCTCGTTGATTTAATGTTTTCGAGTAAAA--G 959
||||||| | || || ||||||| |||||| ||| |||| |||||| | |||| | |
Sbjct 929 GCAAAGGCGGGCTCCCCATGTTCAAAAACCTCCTTGTTTTAGTGTTTTTGGGTAACACTG 988
Query 960 A-CAAGGTTGGAAAGTGCTTCTGCCTCTTCTGCTAGAGCGTTCTCCAAACCTAA-AAAAT 1017
| | || |||||||||| |||| || ||||||||||||| |||||| ||||||| |||||
Sbjct 989 AACGAGTTTGGAAAGTGTTTCTTCCACTTCTGCTAGAGCATTCTCCGAACCTAACAAAAT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5