BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323150
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44610.1 | Symbols: | Protein kinase superfamily protein | ... 1581 0.0
> AT3G44610.1 | Symbols: | Protein kinase superfamily protein
| chr3:16188129-16192175 REVERSE LENGTH=1561
Length=1561
Score = 1581 bits (856), Expect = 0.0
Identities = 938/979 (96%), Gaps = 0/979 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCATGGATTGACGAATTAGCCGACGATTTACAGAGTGTAAGCTTTACATCAGCC 60
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 69 ATGGAGCCATGGATTGACGAATTAACCGACGACTTACAGAGTGTAAGCTTTACATCAGCC 128
Query 61 GGAACCACCGTGAATCGAAGCACTAGCTCCGGTTCTCGCTCTTCCTCCTCCGCCGCAGCT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 129 GGAACCACCGTGAATCGAAGCACAAGCTCCGGTTCTCGCTCTTCCTCCTCCGCCGCAGCT 188
Query 121 TTAACACCAGCACCATCAGCTCACGGTTCATTCTCATCCTCAAAACTTCCTCCTTCACTC 180
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 189 TTAACACCAGCACCATCAGCTCACGGTTCATTCTCATCTTCGAAACTCCCTCCTTCACTC 248
Query 181 CGATCATCACTCTCACTTTCCGATCTCAGATTCCGTCTCCGTCTCGGTTCCGGCGACATC 240
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CGATCATCTCTCTCACTCTCCGATCTCAGATTCCGTCTCCGTCTCGGTTCCGGCGACATC 308
Query 241 GGTTCTGTTTTCTTAGCCGAATTCAAATCCCTAACCGCCGTAACAGAAACCACCGCCGTG 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GGCTCTGTTTTCTTAGCCGAATTCAAATCCCTAACCGCCGTAACAGAAACCACCGCCGTT 368
Query 301 AAATTACCTCTGTTAGCAGCGAAAGTTATGGATAAAAAGGAACTCGCGAGCAGAAGCAAA 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 369 AAATTACCTCTGTTAGCAGCGAAAGTTATGGATAAAAAGGAGCTCGCGAGCAGAAGCAAA 428
Query 361 GAAGGAAGAGCGAAGACGGAGAGAGAGATTTTCGAATCTCTTGATCATCCGTTTCTTCCG 420
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 GAAGGTAGAGCTAAGACGGAGAGAGAGATTCTCGAATCTCTTGATCATCCGTTTCTTCCG 488
Query 421 ACGCTTTACGCCGCCATTGATTCGCCGAAATGGCTCTGTTTGTTAACGGAGTTTTGTCCC 480
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 489 ACGCTTTACGCCGCCATTGATTCTCCGAAATGGCTCTGTTTATTAACGGAGTTTTGTCCC 548
Query 481 GGCGGTGACCTTCATGTTCTCCGTCAAAAACAGAATTATAAACGTTTCCATGAATCCGCC 540
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 549 GGCGGTGACCTTCACGTTCTCCGTCAAAAACAGACTCATAAACGTTTCCATGAATCCGCC 608
Query 541 GTCAGATTCTATGTATCTGAAGTGATCGTGGCGATTGAATATCTTCACATGTTGGGGATT 600
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 609 GTCAGATTCTATGTATCGGAAGTGATCGTAGCGATTGAATATCTTCACATGTTGGGGATT 668
Query 601 GTTTACCGCGATTTGAAGCCTGAGAACGTGCTGGTTCGATCAGATGGTCATATCATGCTA 660
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 669 GTGTACCGCGATTTGAAGCCTGAGAACGTGCTGGTTCGATCAGATGGTCACATCATGTTA 728
Query 661 ACCGATTTTGATCTCTCTTTAAAATGTGATGAATCGACTTCCACACCACAGATAGTGCTG 720
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ACTGATTTTGATCTCTCCTTAAAATGTGATGAATCGACTTCCACACCACAGATAGTGCTG 788
Query 721 AACCGAAACAACCTTCCTAACGGCTCATCTGACCAGAACGAAAACCAAGGCATGGACCAC 780
||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 789 AACCGGAACAATCTTCCTAATGGCTCGTCTGACCAGAACGAGAACCAAGGCATGGACCAC 848
Query 781 CATCAAACCACATCGTCCTCTTGCATGATCCCTAACTGTATTGTCCCTGCTGTCTCTTGC 840
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CGTCAAACCACATCATCCTCTTGCATGATCCCTAACTGTATTGTCCCTGCTGTCTCTTGC 908
Query 841 TTTCACCCGAGAATCCGAAGGCGCAAGAAGAAAACCGATCACCGTAACAACGGTCCTGAG 900
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 909 TTCCACCCGAGAATCCGAAGGCGTAAGAAGAAAACTGATCACCGTAACAACGGTCCTGAG 968
Query 901 CTTGTAGCCGAGCCTGTGGATGTCCGGTCCATGTCCTTCGTTGGGACGCATGAGTACTTG 960
||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 969 CTTGTGGCTGAACCTGTAGATGTCCGGTCCATGTCATTCGTTGGGACGCATGAGTACTTG 1028
Query 961 GCTCCTGAGATTGTTTCAG 979
|||||||||||||||||||
Sbjct 1029 GCTCCTGAGATTGTTTCAG 1047
Score = 614 bits (332), Expect = 9e-175
Identities = 364/380 (96%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 1037 CAGGAGAAGGACACGGGAGTGCGGTGGACTGGTGGACATTAGGGATATTCATGTTCGAGC 1096
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1045 CAGGAGAAGGACATGGTAGTGCAGTGGACTGGTGGACATTAGGGATATTCATGTTCGAGC 1104
Query 1097 TGTTCTACGGAACAACACCGTTCAAAGGAATGGACCACGAGCTAACCCTTGCCAACATCG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1105 TGTTCTACGGAACAACACCGTTCAAAGGAATGGACCACGAGCTAACCCTTGCCAATATCG 1164
Query 1157 TGGCTCGAGCCCTCGAATTCCCGAAAGAACCAACGATTCCAAGCGCAGCCAAGGATCTGA 1216
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1165 TGGCTCGAGCACTCGAATTCCCGAAAGAACCAACGATTCCAAGCGCGGCCAAGGATCTGA 1224
Query 1217 TCTCTCAGCTACTGGCCAAGGACCCGAGCAGACGGTTAGGGTCATCTCTGGGTGCAACGG 1276
||||||||||||| |||||||| || ||| ||||||||||||||||||| ||||||||||
Sbjct 1225 TCTCTCAGCTACTTGCCAAGGATCCTAGCCGACGGTTAGGGTCATCTCTAGGTGCAACGG 1284
Query 1277 CCGTGAAACGCCACCCATTTTTCCAAGGAGTGAATTGGGCATTGCTCATGTGTACTCGTC 1336
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 CCGTGAAACGTCATCCATTTTTCCAAGGAGTGAATTGGGCATTGCTCATGTGTACTCGTC 1344
Query 1337 CTCCTTTTCTTCCTCCGCCTTTTCGCAAAGAACTTTTATCCGATGACATTTGTCCGGAAA 1396
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1345 CTCCTTTTCTTCCTCCGCCTTTCCGCAAAGAACTTTTGTCAGATGACATTTGTCCGGAAA 1404
Query 1397 CCCATGTCGACTATTATTAA 1416
||||||||||||||||||||
Sbjct 1405 CCCATGTCGACTATTATTAA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5