BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323188
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45100.1 | Symbols: SETH2 | UDP-Glycosyltransferase superfam... 2169 0.0
> AT3G45100.1 | Symbols: SETH2 | UDP-Glycosyltransferase superfamily
protein | chr3:16504460-16507404 FORWARD LENGTH=1827
Length=1827
Score = 2169 bits (1174), Expect = 0.0
Identities = 1315/1378 (95%), Gaps = 29/1378 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAACCACCAAAGCTCAGGGTTTTAATGGTCTCTGATTTCTTCTTCCCAAACTTT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 101 ATGGCGGAACCACCAAAGCTTAGGGTTTTAATGGTCTCTGATTTCTTCTTCCCAAACTTT 160
Query 61 GGTGGTGTCGAGAATCACATCTATTATCTCTCTCAATGCTTGTTAAAGCTCGGTCACAAG 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 161 GGTGGTGTCGAGAATCACATCTATTACCTCTCTCAATGCTTGTTAAAGCTCGGTCACAAG 220
Query 121 GTGGTGGTTATGACACATGCTTATGGGAACCGTTCTGGAGTTCGATACATGACTGGTGGA 180
||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 221 GTGGTTGTTATGACACATGCTTATGGGAACCGGTCTGGAGTTAGATACATGACTGGTGGA 280
Query 181 CTCAAAGTCTATTATGTACCTTGGAGACCTTTTGTTATGCAGACTACATTTCCGACGGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CTCAAAGTCTATTATGTACCTTGGAGACCTTTTGTTATGCAGACTACATTTCCGACGGTT 340
Query 241 TATGGAACACTTCCCATTGTGAGGACTATACTTAGACGCGAGAAAATCACGGTGGTTCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 341 TATGGAACACTTCCCATTGTGAGGACTATACTTAGACGCGAGAAAATCACGGTAGTTCAT 400
Query 301 GGACATCAAGCTTTCTCTACGCTTTGTCATGAAGCTTTAATGCATGCCAGGACAATGGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GGACATCAAGCTTTCTCTACGCTTTGTCATGAAGCTTTAATGCATGCCAGGACAATGGGC 460
Query 361 TATAAAGTTGTGTTCACTGATCATTCCTTGTACGGTTTTGCTGATGTTGGGAGTATCCAT 420
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 461 TATAAAGTTGTGTTCACAGATCATTCCTTGTACGGTTTTGCTGATGTTGGTAGCATCCAT 520
Query 421 ATGAACAAGGTTTTACAGTTTAGTTTAGCAGATATAGACCAGGCGATTTGTGTTTCACAC 480
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 521 ATGAACAAGGTTTTACAGTTTAGTTTAGCAGATATTGATCAGGCGATTTGTGTTTCACAC 580
Query 481 ACGAGCAAGGAGAATACTGTTCTAAGGTCTGGATTGTCCCCAGCAAAGGTTTTTATGATA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 ACGAGCAAGGAGAATACGGTTCTAAGGTCTGGATTGTCCCCAGCAAAGGTTTTTATGATA 640
Query 541 CCAAATGCTGTTGATACTGCTATGTTCAAGCCCGCTTCTGTTCGACCCAGTGCTGATATC 600
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 641 CCGAATGCTGTTGATACTGCTATGTTCAAGCCCGCTTCTGTTCGACCCAGTACTGATATT 700
Query 601 ATTACTATAGTTGTCATAAGTAGATTGGTTTATCGGAAAGGTGCTGATTTGCTCGTTGAA 660
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 701 ATTACTATAGTTGTCATAAGTAGATTGGTTTATCGAAAAGGTGCGGATTTGCTCGTGGAA 760
Query 661 GTCATTCCAGAAGTATGCCGTTTATACCCGAATGTTCGTTTTGTAGTTGGAGGGGATGGA 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 761 GTCATTCCAGAAGTATGCCGTTTATACCCAAATGTTCGTTTTGTAGTTGGAGGGGATGGA 820
Query 721 CCTAAACATGTGCGACTCGAGGAAATGAGAGAGAAGCATTCTCTCCAAGATAGAGTCGAA 780
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 821 CCAAAACATGTGCGACTCGAGGAAATGAGAGAGAAGCATTCTCTACAAGATAGAGTCGAA 880
Query 781 ATGTTGGGTGCAGTTCCGCATTCTCGTGTGCGCTCTGTTTTGGTGACCGGTCATATTTTT 840
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 881 ATGCTAGGTGCAGTTCCGCATTCTCGTGTGCGCTCTGTTTTGGTTACCGGTCATATTTT- 939
Query 841 CTTAA-CAGTTCTTTAACAGAAGCCTTCTGCATAGCCATATTAGAGGCGGCTAGTTGCGG 899
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 940 CTTAAACAGTTCTTTAACAGAAGCCTTCTGCATAGCTATATTAGAGGCGGCTAGTTGCGG 999
Query 900 ATTATTAACTGTCAGCACTCGTGTTGGAGGTGTCCCAGAGGCGttttttttCCACGGTTT 959
||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1000 ATTATTAACTGTCAGCACTCGTGTTGGAGGTGTCCCAGAGG--T-------C-----TT- 1044
Query 960 ACAGGTCCTACCAGATGACATGGTTGTACTTGCTGAACCAGATCCGGATGATATGGTACG 1019
|| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 AC----C--A---GATGACATGGTTGTACTTGCTGAACCAGATCCGGATGATATGGTACG 1095
Query 1020 AGCAATTGAGAAGGCAATATCAATACTTCCAAGTATTAACCCCGAGGAGATGCACAATCG 1079
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1096 AGCTATTGAGAAGGCAATATCAATACTTCCAACTATTAACCCCGAGGAGATGCACAATCG 1155
Query 1080 AATGAAGAAGCTCTACAGTTGGCAAGATGTTGCTAAAAGAACCGAGATTGTGTACGATCG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1156 AATGAAGAAGCTCTACAGTTGGCAAGATGTTGCTAAAAGAACCGAGATTGTGTATGACCG 1215
Query 1140 TGCCTTGAAGTGTTCAAATAGGAGTCTTCTAGAACGTCTA-TCGCGGTTCCTCTCGTGTG 1198
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1216 TGCCTTGAAGTGTTCAAATAGGAGTCTTCTAGAACGTCTAAT-GCGGTTCCTCTCGTGTG 1274
Query 1199 GAGCTTGGGCAGGGAAGCTATTTTGTATGGTTATGATCCTCGATTACTTGCTTTGGCGGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GAGCTTGGGCAGGGAAGCTATTTTGTATGGTTATGATCCTCGATTACTTGCTTTGGCGGT 1334
Query 1259 TACTTCAGTTACTACAGCCTGATGAAGATATCGAGGAGGCACCCGATATCCGTCTTTGCC 1318
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1335 TACTTCAGTTACTGCAGCCTGATGAAGATATCGAGGAGGCACCCGATATCTGTCTTTGCC 1394
Query 1319 ATCAGCGAGGCGTCGAGGTATCTGAGGGTCTCAAGGAAGAAGATAAAGTGAGAAATGG 1376
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1395 ATCACCGAGGGGTTGAGGTATCTGAGGGTCT-AAGGAAGAAGATAAAGTGAGAAATGG 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5